| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 208 [0] | [0] 204 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 158 (1.410) +CAGATAATTCAA |
62/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 204 total aligned reads displayed.
GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 | ctcctgattttagtaatctcttgatgctaagaactatcagataattcaaa < 2:4352473‑M2/1‑1 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:2875739‑M2/49‑50 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 1:1765149‑M2/48‑50 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 1:2538144‑M2/48‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAg < 2:5153717‑M2/2‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:4608238‑M2/3‑1 (MQ=255) gattttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg > 1:5246597‑M2/45‑50 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 2:3070627‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg < 2:4759797‑M2/7‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:5689109‑M2/6‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:869629‑M2/6‑1 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc > 2:5396530‑M2/43‑50 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 2:3964491‑M2/42‑50 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 1:2637931‑M2/42‑50 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 2:3119143‑M2/42‑50 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 1:5043016‑M2/42‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg > 2:3321560‑M2/41‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 2:4054652‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 2:5298093‑M2/9‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 2:5438999‑M2/40‑50 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:5602578‑M2/40‑50 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:1885341‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:472034‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 2:5221113‑M2/13‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga < 2:296690‑M2/16‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 2:5649867‑M2/15‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 2:3581943‑M2/15‑1 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:1415061‑M2/34‑49 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:1534969‑M2/34‑49 (MQ=255) ctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:956768‑M2/33‑48 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:2190752‑M2/32‑50 (MQ=255) ttgttgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 2:3616809‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:4843163‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:5235109‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 2:3892133‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:1307517‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 2:2081849‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 2:1226556‑M2/19‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 2:1716898‑M2/22‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:3328342‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:415711‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 2:4509198‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 2:5499304‑M2/24‑1 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:4986484‑M2/26‑50 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa < 1:3921163‑M2/25‑1 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 1:3710216‑M2/26‑50 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 2:3363996‑M2/25‑50 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 1:538984‑M2/25‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:5178468‑M2/26‑1 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 2:80289‑M2/23‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 2:3786685‑M2/23‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:3429178‑M2/23‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 2:600918‑M2/23‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 2:1525621‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt < 2:1039357‑M2/30‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:3590761‑M2/28‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:1478601‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:2383769‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 2:4788049‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:3978736‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt > 2:4769111‑M2/20‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 2:4543522‑M2/19‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt < 2:2466990‑M2/32‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:2239848‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:4762018‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 2:2545546‑M2/18‑49 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 2:3850281‑M2/17‑50 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:4380509‑M2/34‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 2:1325197‑M2/17‑50 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 2:2207335‑M2/34‑1 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 2:4454247‑M2/16‑50 (MQ=255) tatcagataattcaaAGCGTGGCTGGGATGATAGGAATTATGTTTTTTAc > 2:1972628‑M2/16‑50 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:2115969‑M2/15‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:3167866‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:540578‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg < 2:5054659‑M2/36‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg < 2:183591‑M2/36‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:4473343‑M2/14‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:2983555‑M2/14‑50 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTTCGTg < 1:3386879‑M2/38‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 2:4406484‑M2/40‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 1:729143‑M2/40‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa > 1:4632748‑M2/11‑50 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 2:4654809‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 2:2870057‑M2/41‑1 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 2:4159388‑M2/8‑48 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 2:2360715‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:2934064‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag < 1:3723495‑M2/44‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:242468‑M2/43‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 2:3683699‑M2/45‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 2:4591146‑M2/4‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGataata < 2:1451248‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:1268268‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 2:4893882‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:1777455‑M2/48‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 2:32943‑M2/2‑50 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 2:1279326‑M2/2‑50 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa < 1:1189410‑M2/49‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 2:761838/50‑1 (MQ=255) | GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |