| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 163 [0] | [0] 161 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 135 (1.090) | 61/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
Only 100 of 161 total aligned reads displayed.
GCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA > NC_000913/2565441‑2565538 | ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg > 1:5337671‑M2/49‑49 (MQ=255) gccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa > 1:2388317‑M2/47‑50 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa < 2:1569009‑M2/4‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa < 1:2821742‑M2/4‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt < 1:99402‑M2/5‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg < 1:414391‑M2/6‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 1:1912734‑M2/45‑50 (MQ=255) cgaacaatgtggtctttagtttcataagtcgctccctcaggaagGAAATg < 2:465671‑M2/6‑1 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:2254444‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:2334218‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:925192‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 2:2045657‑M2/44‑50 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:1231368‑M2/43‑49 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:635391‑M2/43‑49 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCg < 1:3105012‑M2/8‑1 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGa < 2:1679547‑M2/9‑1 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg > 2:4890174‑M2/41‑50 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg < 2:534471‑M2/10‑1 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg > 1:3276650‑M2/41‑50 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt < 1:2039357‑M2/11‑1 (MQ=255) atgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTg < 1:1211452‑M2/12‑1 (MQ=255) gtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAt > 1:4942459‑M2/37‑50 (MQ=255) ggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 2:4741949‑M2/35‑50 (MQ=255) ggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:2125751‑M2/35‑50 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGGGTGAttt < 2:960270‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 1:5386106‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 2:2791984‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 2:3552217‑M2/17‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 2:2686351‑M2/17‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca < 2:2125073‑M2/18‑1 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 2:1292737‑M2/32‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 2:2909977‑M2/32‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 1:599866‑M2/32‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 2:5263611‑M2/32‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 2:4046108‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 2:4293366‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 1:1619926‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 2:590363‑M2/31‑50 (MQ=255) ttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg > 2:1211171‑M2/30‑50 (MQ=255) ttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg > 1:3948090‑M2/30‑50 (MQ=255) ttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg > 1:4761177‑M2/30‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg < 2:4203467‑M2/21‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg < 1:627511‑M2/21‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg < 1:5163910‑M2/21‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc < 1:4987988‑M2/20‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc < 1:900327‑M2/20‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:3242902‑M2/19‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:523655‑M2/19‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 1:980682‑M2/28‑49 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 2:1422489‑M2/28‑49 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 1:2872095‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 2:5325662‑M2/23‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 1:4008356‑M2/23‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 1:3414364‑M2/23‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac > 1:4204486‑M2/26‑50 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac > 1:484390‑M2/26‑50 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc > 1:2616688‑M2/25‑50 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc > 2:4329749‑M2/25‑50 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 2:3114818‑M2/26‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 2:3702261‑M2/23‑50 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 2:1312437‑M2/22‑49 (MQ=255) taagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGca > 2:2616778‑M2/21‑50 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcaca < 2:1596374‑M2/32‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac < 2:2627228‑M2/31‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac < 1:3086346‑M2/31‑1 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa < 2:2986332‑M2/33‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc < 2:4981155‑M2/34‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc < 1:466147‑M2/34‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc < 1:3510686‑M2/34‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 2:2035923‑M2/15‑49 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 2:3667056‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCg < 2:4273203‑M2/36‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCg < 2:217989‑M2/36‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 1:3745159‑M2/37‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 2:1692575‑M2/37‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 2:1658961‑M2/37‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 1:4444174‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 2:4651069‑M2/40‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg > 1:3494004‑M2/10‑50 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 2:5086422‑M2/41‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg > 2:1200778‑M2/10‑50 (MQ=255) tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:3632237‑M2/9‑50 (MQ=255) tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:1801728‑M2/9‑50 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:1445934‑M2/8‑49 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:758726‑M2/8‑49 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:2988967‑M2/8‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc > 2:3361673‑M2/7‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc < 2:755881‑M2/43‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc < 2:1073378‑M2/42‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc < 1:5236194‑M2/42‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa < 2:539869‑M2/44‑1 (MQ=255) ggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa > 2:3091049‑M2/6‑49 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa < 2:2471622‑M2/46‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa < 2:3575083‑M2/46‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaa > 1:3030377‑M2/5‑49 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaa < 2:4407134‑M2/47‑1 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaa < 1:1469964‑M2/47‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 2:2988753‑M2/48‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:2562612‑M2/3‑48 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 2:3138620‑M2/2‑47 (MQ=255) | GCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA > NC_000913/2565441‑2565538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |