| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 191 [0] | [0] 197 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 184 (1.260) | 79/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 197 total aligned reads displayed.
GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 | atggtatttccggttcgataatgcttgtaccaacagggagggaatacgag < 2:876647‑M2/1‑1 (MQ=255) tggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:3005872‑M2/2‑1 (MQ=255) tggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 2:1475319‑M2/49‑49 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:2812717‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:5448144‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa < 2:1224910‑M2/4‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:3152385‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa < 2:3105122‑M2/4‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa < 1:2589997‑M2/4‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:1320651‑M2/46‑50 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:3502168‑M2/46‑50 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 2:817839‑M2/46‑50 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:149060‑M2/45‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca < 1:5309893‑M2/7‑1 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 2:1366016‑M2/6‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 1:798029‑M2/9‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 2:5352981‑M2/9‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:4572107‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 2:1795923‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:3143486‑M2/11‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 2:2043886‑M2/39‑50 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:1743388‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:576552‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:4321954‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 2:4100013‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:1842827‑M2/13‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 2:1033939‑M2/13‑1 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:1357703‑M2/36‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 2:5132469‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 2:3954123‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:1366978‑M2/15‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCAAAGGACAtt > 2:3878687‑M2/35‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:3719739‑M2/34‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:2040497‑M2/34‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc < 2:3421716‑M2/18‑1 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 2:4731814‑M2/33‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:4241344‑M2/33‑50 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 2:2461785‑M2/32‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 2:5229427‑M2/19‑1 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:2358142‑M2/31‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:1186769‑M2/31‑49 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa > 2:117422‑M2/30‑50 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa > 2:5166901‑M2/30‑50 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa < 1:1108920‑M2/21‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa < 2:3320370‑M2/21‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 2:2100367‑M2/20‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:4580035‑M2/29‑50 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:4480312‑M2/22‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:2112999‑M2/22‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:1647164‑M2/28‑50 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGc > 1:729368‑M2/27‑50 (MQ=255) ttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt > 2:1425279‑M2/26‑50 (MQ=255) ttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt > 1:225412‑M2/26‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 2:2582900‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 2:2632835‑M2/25‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:5660659‑M2/28‑1 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 2:4814444‑M2/22‑50 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:3358654‑M2/22‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa < 1:2171861‑M2/29‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa < 2:693996‑M2/29‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 2:4202596‑M2/21‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:3028388‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:3050509‑M2/21‑50 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg < 2:2670259‑M2/31‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:3411693‑M2/33‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:4094171‑M2/33‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:2698262‑M2/34‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:3449335‑M2/34‑1 (MQ=255) agggagggaatactaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:3811179‑M2/35‑1 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 2:4640841‑M2/35‑1 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 2:2990936‑M2/35‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAata < 1:5059009‑M2/36‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:4871695‑M2/14‑50 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 2:2233252‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:932238‑M2/39‑1 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc > 1:3326700‑M2/11‑50 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc > 1:3921461‑M2/11‑50 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc > 1:1049745‑M2/10‑50 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:1997062‑M2/41‑1 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 2:4334192‑M2/41‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:2526550‑M2/42‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:1949440‑M2/9‑50 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:4687325‑M2/42‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 2:1930654‑M2/43‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:1515376‑M2/7‑49 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGaa < 2:1126772‑M2/45‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 2:1455104‑M2/46‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:3633527‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:1561711‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:4380718‑M2/48‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 2:5199866‑M2/48‑1 (MQ=255) aGATATCACAGGACATTGCTAACCCTGGCACGCAATATTACCTGAAGCt > 2:5398922‑M2/2‑49 (MQ=255) aGAAATCACTGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa < 2:1401978‑M2/49‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt > 1:4955826‑M2/2‑49 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa < 1:3878300‑M2/49‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:5391043/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 2:1337513/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 2:2241143/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 2:1491729/1‑49 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 2:735300/1‑49 (MQ=255) | GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |