Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 12,086 C→T intergenic (‑300/‑77) yaaI ← / → dnaK DUF2541 domain‑containing protein YaaI/chaperone protein DnaK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091312,0860CT100.0% 573.0 / NA 150intergenic (‑300/‑77)yaaI/dnaKDUF2541 domain‑containing protein YaaI/chaperone protein DnaK
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (77/73);  total (77/73)

Only 100 of 150 total aligned reads displayed.

TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACAT  >  NC_000913/12039‑12132
                                               |                                              
ttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                              >  1:1134646/1‑50 (MQ=255)
 tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                              <  2:280838/49‑1 (MQ=255)
 tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt                                             >  1:799847/1‑50 (MQ=255)
  agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                            >  2:5373344/1‑50 (MQ=255)
  agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt                                             <  1:4756827/49‑1 (MQ=255)
   gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg                                           <  1:530060/50‑1 (MQ=255)
    tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg                                           >  2:2998586/1‑49 (MQ=255)
    tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                          <  1:4621549/50‑1 (MQ=255)
    tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                          <  1:3199408/50‑1 (MQ=255)
     agtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                          >  1:5658863/1‑49 (MQ=255)
      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa                                        >  2:1152042/1‑50 (MQ=255)
      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa                                        <  2:3148944/50‑1 (MQ=255)
      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa                                         <  1:646297/49‑1 (MQ=255)
      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa                                         <  2:2606845/49‑1 (MQ=255)
       tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       <  1:65160/50‑1 (MQ=255)
       tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  2:4100940/1‑50 (MQ=255)
        cAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:3824266/1‑49 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAcc                                      <  2:831326/49‑1 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:941439/1‑48 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  2:2749251/1‑48 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:3953087/1‑48 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  2:5353150/1‑48 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCa                                     <  2:3425903/50‑1 (MQ=255)
         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTCGGTAGTTGAAACCa                                     <  1:1696139/50‑1 (MQ=255)
         aaCCGCAGTGAGGGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCa                                     <  2:5112366/50‑1 (MQ=255)
          aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAg                                    <  1:3658406/50‑1 (MQ=255)
           ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                   <  1:3111909/50‑1 (MQ=255)
            cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  2:1170881/50‑1 (MQ=255)
            cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  2:2239368/50‑1 (MQ=255)
            cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  2:3534440/50‑1 (MQ=255)
            cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  >  1:2088391/1‑50 (MQ=255)
            cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  2:2130685/50‑1 (MQ=255)
             gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                 >  2:4400675/1‑50 (MQ=255)
             gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                 >  1:2629921/1‑50 (MQ=255)
             gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                 >  1:2333944/1‑50 (MQ=255)
             gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                 >  1:870506/1‑50 (MQ=255)
              cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt                                >  2:380318/1‑50 (MQ=255)
              cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt                                >  2:4429090/1‑50 (MQ=255)
               agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                               >  2:3269185/1‑50 (MQ=255)
                gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt                              >  2:3556612/1‑50 (MQ=255)
                gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt                              >  2:5588144/1‑50 (MQ=255)
                gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt                              <  2:798011/50‑1 (MQ=255)
                 tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc                             <  2:3203312/50‑1 (MQ=255)
                 tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc                             <  2:4352415/50‑1 (MQ=255)
                 tgagtgagTCCGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc                             <  2:4486268/50‑1 (MQ=39)
                  gagtgagtCTGCAAAAAAATGAAATTGGGTAGCTGAAACCAGACGTTTCg                            >  2:472459/1‑50 (MQ=255)
                   agtgcgtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                           >  2:4009032/1‑50 (MQ=255)
                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAGCCAGACGTTTCg                            <  2:3032508/49‑1 (MQ=255)
                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                           <  2:1367881/50‑1 (MQ=255)
                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                           >  1:3288822/1‑50 (MQ=255)
                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                           >  2:2527756/1‑50 (MQ=255)
                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                           <  2:1759752/50‑1 (MQ=255)
                      gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  2:245536/1‑50 (MQ=255)
                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        <  2:2849721/49‑1 (MQ=255)
                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:1309884/1‑49 (MQ=255)
                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt                       <  1:5693503/50‑1 (MQ=255)
                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      <  1:1393759/50‑1 (MQ=255)
                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      <  2:3258201/50‑1 (MQ=255)
                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      >  2:1338085/1‑50 (MQ=255)
                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      >  2:2869873/1‑50 (MQ=255)
                         tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     >  2:2622122/1‑50 (MQ=255)
                         tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     <  1:4061986/50‑1 (MQ=255)
                         tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     >  1:4919687/1‑50 (MQ=255)
                         tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     <  1:180033/50‑1 (MQ=255)
                          cTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     >  1:196118/1‑49 (MQ=255)
                           tGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  2:4949310/1‑50 (MQ=255)
                             cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   <  1:3602829/48‑1 (MQ=255)
                             cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTAc                  <  1:5350198/49‑1 (MQ=255)
                             cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTAc                  <  1:2838512/49‑1 (MQ=255)
                              aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  1:5174858/1‑47 (MQ=255)
                              aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  1:5078873/1‑47 (MQ=255)
                              aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  2:2335981/1‑47 (MQ=255)
                              aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAg                <  1:2364328/50‑1 (MQ=255)
                               aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa               <  1:1486259/50‑1 (MQ=255)
                               aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa               <  1:799302/50‑1 (MQ=255)
                               aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa               >  2:4025605/1‑50 (MQ=255)
                               aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa               >  2:4762358/1‑50 (MQ=255)
                                aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc              <  2:5596386/50‑1 (MQ=255)
                                 aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             <  1:3561306/50‑1 (MQ=255)
                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             >  1:485979/1‑49 (MQ=255)
                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             >  2:5464091/1‑49 (MQ=255)
                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc            <  2:4394820/50‑1 (MQ=255)
                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc            <  1:2062009/50‑1 (MQ=255)
                                   aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca           <  2:2251081/50‑1 (MQ=255)
                                   aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca           >  2:1610209/1‑50 (MQ=255)
                                    aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac          <  2:2516625/50‑1 (MQ=255)
                                    aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca           >  2:3854474/1‑49 (MQ=255)
                                    aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca           >  2:1907902/1‑49 (MQ=255)
                                       aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       <  2:5184833/50‑1 (MQ=255)
                                       aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       <  2:5449587/50‑1 (MQ=255)
                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:2237650/1‑49 (MQ=255)
                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  2:198319/1‑49 (MQ=255)
                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  2:3602368/1‑49 (MQ=255)
                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCACTATTACAGACTCACAAc       >  2:3470024/1‑49 (MQ=38)
                                         aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca     <  2:1626999/50‑1 (MQ=255)
                                         aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca     <  2:2130212/50‑1 (MQ=255)
                                         aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca     <  1:3082632/50‑1 (MQ=255)
                                          ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca     >  2:520845/1‑49 (MQ=255)
                                           tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca   >  2:1694446/1‑50 (MQ=255)
                                            gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat  >  2:450916/1‑50 (MQ=255)
                                               |                                              
TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACAT  >  NC_000913/12039‑12132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑