| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,154,362 | C→T | A84V (GCC→GTC) | mltG → | endolytic murein transglycosylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,154,362 | 0 | C | T | 97.3% | 404.7 / ‑1.3 | 112 | A84V (GCC→GTC) | mltG | endolytic murein transglycosylase |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (51/58); total (53/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
TTTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTG > NC_000913/1154315‑1154408 | ttttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCg > 1:4605754/1‑50 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 1:1130705/1‑49 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 2:38893/1‑49 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg < 2:2642071/49‑1 (MQ=255) tCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCggg < 2:3370953/49‑1 (MQ=255) tCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCggg < 2:5293995/49‑1 (MQ=255) cAATGGCTGCTGCGTATCGATCCGGATCTTTCTCACTTTAAAGTCGGGa < 2:2610398/49‑1 (MQ=255) cAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGa < 1:3902371/49‑1 (MQ=255) cAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGAc > 1:3470528/1‑50 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt > 2:5491427/1‑50 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt < 1:3774315/50‑1 (MQ=255) aaTGGCTACTGCGTATCGAACCGGACATTTCTCACTTTAAAGCCGGGACt > 2:5342690/1‑50 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACtt < 2:5435018/50‑1 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa > 1:5552173/1‑50 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa < 1:860095/50‑1 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa < 1:1996083/50‑1 (MQ=255) ggCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAc > 1:2154501/1‑50 (MQ=255) ggCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAc > 1:2296993/1‑50 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAcc < 1:1483957/50‑1 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAcc > 2:4121645/1‑50 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAcc < 2:5432343/50‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg > 2:534282/1‑50 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 2:5420080/50‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:811477/50‑1 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 1:3464973/1‑50 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 2:4061351/1‑50 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 2:1062844/1‑50 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 2:4751857/1‑50 (MQ=255) gctgcGTATCGAACCGTATCTTTCTCACTTTAAATTCGGGACTTACCGCt > 2:1011991/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc < 2:3635705/48‑1 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc < 2:1803451/48‑1 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:5650573/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt < 1:1539906/50‑1 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCt < 2:4958737/49‑1 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCt < 2:2619326/49‑1 (MQ=255) tgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:3944705/1‑49 (MQ=255) gcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa > 1:432186/1‑50 (MQ=255) gcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa > 1:1293453/1‑50 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTac < 2:4485879/50‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTac < 2:2250845/50‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa < 2:4014214/49‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa > 2:547310/1‑49 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa < 2:5564279/49‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 1:1474238/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca < 1:1768571/50‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca < 1:152787/50‑1 (MQ=255) tATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTacac > 1:4511432/1‑50 (MQ=255) tATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTacac > 1:1708571/1‑50 (MQ=255) aTCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc > 2:3706573/1‑50 (MQ=255) aTCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc > 2:3774715/1‑50 (MQ=255) aTCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc > 2:2291556/1‑50 (MQ=255) tCGAACCGGATCTTTCTCATTTTAAAGTCGGGACTTACCGCTTTACACCg < 1:5688790/50‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 1:1758167/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 2:4854923/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 1:4771189/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg < 2:749071/50‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg < 1:747841/50‑1 (MQ=255) cGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:1826293/1‑49 (MQ=255) cGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 2:3572516/1‑49 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCa < 2:1493536/50‑1 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:1779602/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 2:1421517/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGa < 1:4842533/50‑1 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 2:5488735/1‑50 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 2:4410862/1‑49 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATg < 1:1856108/50‑1 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa > 1:3276866/1‑50 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa < 2:1180500/50‑1 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa > 1:4877776/1‑50 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa < 2:1102220/50‑1 (MQ=255) gATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAc < 2:5335276/50‑1 (MQ=255) gATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAc > 1:4160053/1‑50 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 2:4364712/1‑50 (MQ=255) tCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCg > 1:888577/1‑50 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt < 2:3704680/47‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt < 1:5692048/47‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt < 1:1864094/47‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcg > 2:2812001/1‑50 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc < 1:3483361/49‑1 (MQ=255) ctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 2:2130135/1‑50 (MQ=255) cACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:2182224/1‑48 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCga < 2:4664494/49‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCga < 2:1903913/49‑1 (MQ=255) cattAAAGTCGGGACTTACCGCTTTGCACCGCAGATGACCGTGAGCgaga < 2:1745929/48‑1 (MQ=37) cTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCgaga < 2:5054691/50‑1 (MQ=255) ttAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATg > 1:2753998/1‑50 (MQ=255) ttAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATg > 2:3086983/1‑50 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 1:1045916/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 2:4577262/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 1:445756/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 1:4797013/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATg < 2:3457302/49‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGc > 2:2576151/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 2:4260675/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 2:1465127/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:1545437/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 2:1626883/1‑50 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:364160/1‑49 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 1:1919558/49‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 1:819257/49‑1 (MQ=255) | TTTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTG > NC_000913/1154315‑1154408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |