BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,382,555	C→T	S203S (AGC→AGT)	ompG →	outer membrane porin G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,382,555	0	C	T	100.0%	540.7 / NA	140	S203S (AGC→AGT)	ompG	outer membrane porin G
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (77/63); total (77/63)

Only 100 of 140 total aligned reads displayed.

TTGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGCCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGC  >  NC_000913/1382508‑1382601

ttGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  2:432075/1‑50 (MQ=255)

ttGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  1:4590013/1‑50 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              <  2:3672472/48‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              <  1:4849768/48‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              <  2:5427861/48‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             >  1:671445/1‑49 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             >  1:2772998/1‑49 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             >  1:2146994/1‑49 (MQ=255)

   cGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  2:646949/1‑50 (MQ=255)

   cGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           <  2:4446826/50‑1 (MQ=255)

    gAGTGGACTATTATTTCGAGCGCGGCTTCAATATGGACAACAGTCGCAAt                                          <  2:2734546/50‑1 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:2737042/1‑49 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          <  1:2126604/50‑1 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          <  1:681240/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          >  2:5350501/1‑49 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          >  1:362013/1‑49 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  2:1668057/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  2:1996873/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:5414346/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:1255976/50‑1 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        >  2:4089424/1‑50 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        >  2:5075572/1‑50 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        <  1:3798053/50‑1 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        <  1:691407/50‑1 (MQ=255)

      gTGAACGATTATCTCGAGCGCGGCTTCAATATGGACGTCAGTCGCAATaa                                        >  1:32012/1‑50 (MQ=38)

        gAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACg                                      >  1:3492796/1‑50 (MQ=255)

        gAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACg                                      >  2:5536430/1‑50 (MQ=255)

        gAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACg                                      >  1:861554/1‑50 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACgg                                     >  2:2228279/1‑50 (MQ=255)

          aCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    <  2:3319368/50‑1 (MQ=255)

          aCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  2:4346302/1‑50 (MQ=255)

          aCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  2:753534/1‑50 (MQ=255)

           cTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:3606688/1‑49 (MQ=255)

           cTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  2:1327255/1‑49 (MQ=255)

           cTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTg                                   <  1:1277134/50‑1 (MQ=255)

            tattatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:5099387/1‑48 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAg                                 <  2:1000783/49‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAg                                 <  2:1466513/49‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                <  1:4698691/50‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                >  1:2294478/1‑50 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                >  1:1048351/1‑50 (MQ=255)

              ttatCGCGAGAGCGGCTTCAACGTGGACGACAGTCGCAATAACGGTGAgc                                >  2:2910400/1‑49 (MQ=25)

               tatCTCGAGCACGGCTTCAATATGGACGACAGTCGCAATAACGTTGAGtt                               >  2:756807/1‑50 (MQ=255)

                  ctcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            >  1:4170639/1‑50 (MQ=255)

                   tcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            >  2:1143880/1‑49 (MQ=255)

                   tcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            >  2:3755958/1‑49 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtttt                             <  1:3633644/46‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtttt                             <  1:2289362/46‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTcc                           <  1:2848042/48‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCa                          <  1:704899/49‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         <  2:2631974/50‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         <  1:2907277/50‑1 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        >  1:3784849/1‑50 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        <  1:2372412/50‑1 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        >  2:3398388/1‑50 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:2813843/1‑49 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:3279029/1‑49 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:397802/1‑48 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:1626115/1‑48 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:4293346/1‑48 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:1936925/1‑48 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCaa                     <  1:2512086/50‑1 (MQ=255)

                          cgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  1:1936121/1‑47 (MQ=255)

                          cgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    <  2:5501259/50‑1 (MQ=255)

                           ggCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    >  2:2640584/1‑49 (MQ=255)

                           ggCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGa                   <  1:1799904/50‑1 (MQ=255)

                           ggCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGa                   <  1:3035755/50‑1 (MQ=255)

                            gCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGaa                  <  2:1374748/50‑1 (MQ=255)

                            gCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGaa                  <  1:4186720/50‑1 (MQ=255)

                            gCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGaa                  <  1:1791125/50‑1 (MQ=255)

                            gCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGa                   >  1:1428329/1‑49 (MQ=255)

                              ttCAATATGGTCGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                >  2:176645/1‑50 (MQ=255)

                              ttCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                >  1:2723367/1‑50 (MQ=255)

                               tCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               >  1:4735397/1‑50 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               <  1:1721303/49‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                <  2:471326/48‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              >  1:3492280/1‑50 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              >  2:4786960/1‑50 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              >  1:4400648/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcg             <  2:4676465/50‑1 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcg             >  1:2419423/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              <  1:5416056/49‑1 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            >  1:4404754/1‑50 (MQ=255)

                                   tatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgcg           <  1:89242/50‑1 (MQ=255)

                                    atGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          >  2:2444192/1‑50 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  2:4576018/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  1:3968610/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  1:861150/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGcc         >  1:5677302/1‑50 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCt        <  2:1379031/49‑1 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTa       <  1:650522/50‑1 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTa       >  1:5582712/1‑50 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTa       >  2:4427452/1‑50 (MQ=255)

                                         cgacAGTCGGAATAACGGTGAGGTTTCCACGCAAGAAATTCGCGCTTAtt     <  1:2473009/50‑1 (MQ=255)

                                         cgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAtt     >  2:529376/1‑50 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  1:4612767/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  2:4555664/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    >  2:1431179/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   >  2:545137/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   <  2:2429554/50‑1 (MQ=255)

TTGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGCCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGC  >  NC_000913/1382508‑1382601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`