Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,697,216 T→C intergenic (‑164/+57) uidR ← / ← hdhA DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,697,2160TC100.0% 498.0 / NA 120intergenic (‑164/+57)uidR/hdhADNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (60/60);  total (60/60)

Only 100 of 120 total aligned reads displayed.

TTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC  >  NC_000913/1697171‑1697262
                                             |                                              
ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            <  2:2426043/50‑1 (MQ=255)
ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:5574090/1‑50 (MQ=255)
ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            <  1:3565386/50‑1 (MQ=255)
ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            <  2:44391/50‑1 (MQ=255)
ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  2:5232117/1‑50 (MQ=255)
 tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:1088204/1‑49 (MQ=255)
 tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  2:1414906/1‑49 (MQ=255)
  aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  2:2146797/1‑48 (MQ=255)
   aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         >  2:1608202/1‑50 (MQ=255)
   aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         <  1:3205818/50‑1 (MQ=255)
   aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         >  2:1163598/1‑50 (MQ=255)
     cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt                                       >  1:1333461/1‑50 (MQ=255)
      aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt                                      <  1:4972598/50‑1 (MQ=255)
      aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt                                      <  1:2523488/50‑1 (MQ=255)
      aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt                                       >  1:1004226/1‑49 (MQ=255)
      aaTAGCCGTGATTTGGCTGCCAGGTATTTAGCAGAGACGCTGATGAGtt                                       >  2:4271747/1‑49 (MQ=38)
       aTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTa                                     >  2:2422682/1‑50 (MQ=255)
        tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt                                    <  1:5076037/50‑1 (MQ=255)
          gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATcc                                  <  1:3125319/50‑1 (MQ=255)
          gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATcc                                  <  2:4335640/50‑1 (MQ=255)
            cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg                                <  2:410081/50‑1 (MQ=255)
            cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg                                >  2:4219972/1‑50 (MQ=255)
            cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg                                >  2:2930026/1‑50 (MQ=255)
            cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg                                >  2:565773/1‑50 (MQ=255)
             gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               <  1:5443302/50‑1 (MQ=255)
             gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               <  1:1004826/50‑1 (MQ=255)
             gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               >  1:4207874/1‑50 (MQ=255)
              tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               >  2:3301492/1‑49 (MQ=255)
              tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt                              <  1:4622857/50‑1 (MQ=255)
                aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTa                             <  2:2947074/49‑1 (MQ=255)
                aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTa                             >  1:5700134/1‑49 (MQ=255)
                 tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           <  1:3789116/50‑1 (MQ=255)
                 tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           >  2:1383830/1‑50 (MQ=255)
                 tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           >  2:3061985/1‑50 (MQ=255)
                 tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           >  2:3588024/1‑50 (MQ=255)
                 tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           >  2:4902817/1‑50 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          >  2:2406916/1‑49 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          <  2:1629883/49‑1 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          >  2:1486055/1‑49 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          <  2:1440877/49‑1 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          >  1:771545/1‑49 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          >  2:3423500/1‑49 (MQ=255)
                   tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          <  1:5038316/49‑1 (MQ=255)
                    ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        >  1:2947752/1‑50 (MQ=255)
                    ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        >  2:3659308/1‑50 (MQ=255)
                    ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaaca                         <  1:4335006/49‑1 (MQ=255)
                    ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaaca                         <  1:3528455/49‑1 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaac                       <  1:521172/50‑1 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        >  1:5636411/1‑49 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        >  1:852108/1‑49 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        <  2:3410242/49‑1 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        <  2:4656456/49‑1 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        <  2:5614051/49‑1 (MQ=255)
                     gCTGCCAGTTATTTAGCAGAGAAGCTGATGAGTTTATCCCGGTAaacaac                       <  1:427039/50‑1 (MQ=255)
                      cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCGCGGTAAacaaca                      <  2:3264069/50‑1 (MQ=39)
                      cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca                      <  2:2696937/50‑1 (MQ=255)
                      cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca                      <  1:3417713/50‑1 (MQ=255)
                       tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac                     >  2:502963/1‑50 (MQ=255)
                        gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    >  1:1481358/1‑50 (MQ=255)
                        gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    >  2:4787055/1‑50 (MQ=255)
                        gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    >  1:4754387/1‑50 (MQ=255)
                         ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgc                   <  2:1931651/50‑1 (MQ=255)
                         ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgc                   <  1:4182742/50‑1 (MQ=255)
                         ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgc                   <  1:4952571/50‑1 (MQ=255)
                         ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    <  1:1012369/49‑1 (MQ=255)
                          cAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgca                  >  2:2765770/1‑50 (MQ=255)
                          cAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgca                  <  1:319814/50‑1 (MQ=255)
                           aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 <  1:2580286/50‑1 (MQ=255)
                           aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 <  2:5220345/50‑1 (MQ=255)
                           aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 >  2:527628/1‑50 (MQ=255)
                            gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                >  1:4461005/1‑50 (MQ=255)
                            gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                <  1:2329923/50‑1 (MQ=255)
                             ttATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACgg               >  2:462501/1‑50 (MQ=255)
                               aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt             >  1:149055/1‑50 (MQ=255)
                               aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt             >  2:2978166/1‑50 (MQ=255)
                               aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgt              <  1:350127/49‑1 (MQ=255)
                                tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg            <  2:904125/50‑1 (MQ=255)
                                tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg            >  1:1910518/1‑50 (MQ=255)
                                tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg            <  2:282201/50‑1 (MQ=255)
                                tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt             <  2:574721/49‑1 (MQ=255)
                                 ttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           >  2:4219019/1‑50 (MQ=255)
                                 ttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           >  2:354997/1‑50 (MQ=255)
                                 ttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           >  2:4659364/1‑50 (MQ=255)
                                 ttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           >  2:1748667/1‑50 (MQ=255)
                                  tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt          >  2:388139/1‑50 (MQ=255)
                                  tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt          >  1:4332441/1‑50 (MQ=255)
                                  tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           <  1:2141503/49‑1 (MQ=255)
                                    gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt         <  2:707518/49‑1 (MQ=255)
                                    gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt         <  2:2662218/49‑1 (MQ=255)
                                    gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        <  1:692613/50‑1 (MQ=255)
                                    gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        >  1:4705693/1‑50 (MQ=255)
                                    gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        >  1:2605866/1‑50 (MQ=255)
                                    gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        >  1:2963465/1‑50 (MQ=255)
                                     cAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc       <  2:420715/50‑1 (MQ=255)
                                     cAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc       <  2:4024169/50‑1 (MQ=255)
                                     cAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc       <  1:2567542/50‑1 (MQ=255)
                                      agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc      >  1:4648887/1‑50 (MQ=255)
                                      agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc      <  2:3721991/50‑1 (MQ=255)
                                        agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg    >  1:1508718/1‑50 (MQ=255)
                                          aCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTc  <  2:4791552/50‑1 (MQ=255)
                                             |                                              
TTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC  >  NC_000913/1697171‑1697262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑