| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,811,208 | T→C | V92A (GTT→GCT) | tcyP → | cystine/sulfocysteine:cation symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,811,208 | 0 | T | C | 99.4% | 633.4 / NA | 162 | V92A (GTT→GCT) | tcyP | cystine/sulfocysteine:cation symporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (79/82); minor base A (0/1); total (79/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 162 total aligned reads displayed.
GCAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTG > NC_000913/1811161‑1811254 | gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTg > 2:2570623/1‑50 (MQ=255)gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTg > 1:2945017/1‑50 (MQ=255)gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTg > 1:2990713/1‑50 (MQ=255)gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTg > 1:5640497/1‑50 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc > 1:649220/1‑50 (MQ=255) aaaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGcc > 1:2826363/1‑50 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 1:1012059/50‑1 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 2:1487878/50‑1 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 1:5135555/50‑1 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 2:2811470/50‑1 (MQ=255) gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc > 1:3329858/1‑50 (MQ=255) gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc > 1:123347/1‑50 (MQ=255) aTCGTTATGCCGTTCGTCTTCGCCTCTATTCTGAGCGCGGATGCCCGTCt < 2:4077701/50‑1 (MQ=39) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt < 1:403589/50‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt < 1:1499075/50‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt < 2:2795838/50‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGACCGTCt < 2:4332740/50‑1 (MQ=39) tCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg < 1:741406/50‑1 (MQ=255) cGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg > 1:2017886/1‑49 (MQ=255) cGTTAGGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg > 1:1775705/1‑49 (MQ=38) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGc < 1:1678527/49‑1 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa < 1:5591333/50‑1 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 2:5330871/1‑50 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 2:3989737/1‑49 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 1:5165343/1‑49 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 1:250199/1‑49 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt < 2:2321086/50‑1 (MQ=255) tATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt > 1:3078505/1‑49 (MQ=255) tATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt > 1:4758513/1‑49 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATa < 2:4649463/49‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa < 2:5435049/49‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa < 2:4863685/49‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa < 1:4928598/49‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc < 1:4875240/50‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc < 2:4506294/50‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc < 1:87930/50‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc < 1:1519502/50‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc < 1:1677354/50‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc > 2:1003179/1‑50 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc < 2:353374/50‑1 (MQ=255) gCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg > 1:18393/1‑50 (MQ=255) gCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg > 1:1468505/1‑50 (MQ=255) ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg < 2:610250/49‑1 (MQ=255) ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg < 2:4841108/49‑1 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa < 1:4911633/50‑1 (MQ=255) gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAt > 1:2600373/1‑50 (MQ=255) gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAt > 1:206122/1‑50 (MQ=255) ttAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtc > 2:1277351/1‑50 (MQ=255) tAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct > 2:4131214/1‑50 (MQ=255) tAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct > 1:4186750/1‑50 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct < 2:2043783/49‑1 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct < 1:972121/49‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCa < 2:3223869/50‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCa < 2:1381981/50‑1 (MQ=255) tCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAg > 2:3105156/1‑50 (MQ=255) tCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAg < 2:1832049/50‑1 (MQ=255) cTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 1:5488776/1‑50 (MQ=255) cTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 1:2342558/1‑50 (MQ=255) ttCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 2:2113384/1‑49 (MQ=255) ttCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 1:1427680/1‑49 (MQ=255) tCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 1:527873/1‑48 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 1:263784/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 2:3597565/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 2:1758083/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 1:1248156/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTa < 1:3829630/49‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg > 1:2083098/1‑50 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg < 1:2530438/50‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg > 2:5260984/1‑50 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg < 1:2383802/50‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg < 1:3424730/50‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg > 2:50952/1‑50 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg < 2:5483261/50‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg < 2:5152200/49‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg < 1:2008249/49‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg < 1:3182979/49‑1 (MQ=255) ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGc > 1:5358255/1‑49 (MQ=255) ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCa < 2:1572217/50‑1 (MQ=255) ctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaa > 2:152706/1‑49 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa > 2:3438121/1‑50 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa > 2:696644/1‑50 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa < 1:1009257/48‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaa < 2:3645004/47‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaa < 1:3727067/47‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt > 1:2303240/1‑49 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATc < 2:5560275/50‑1 (MQ=255) cTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCa < 1:2202789/49‑1 (MQ=255) cTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAg > 2:1335178/1‑50 (MQ=255) cTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAg > 1:5108307/1‑50 (MQ=255) gAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtt > 1:1560523/1‑50 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAga < 1:3992270/48‑2 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGttt > 2:2569071/1‑50 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGttt < 1:4377427/50‑1 (MQ=255) gcgcGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt < 2:1120876/50‑1 (MQ=255) gcgcGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt < 2:3778837/50‑1 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 1:4358170/1‑50 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 1:4837367/1‑50 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 2:3832917/1‑50 (MQ=255) cgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 1:408415/1‑49 (MQ=255) cgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 1:2760384/1‑49 (MQ=255) | GCAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTG > NC_000913/1811161‑1811254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |