| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,090,282 | C→T | intergenic (+30/‑65) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,090,282 | 0 | C | T | 99.4% | 667.5 / NA | 171 | intergenic (+30/‑65) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (86/84); minor base G (0/1); total (86/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 171 total aligned reads displayed.
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT > NC_000913/3090235‑3090328 | cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 2:940028/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 2:4991509/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 2:4718633/50‑1 (MQ=255) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg > 1:679583/1‑50 (MQ=255) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg > 2:3379440/1‑50 (MQ=255) cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 1:3132974/1‑50 (MQ=255) cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 2:3758297/1‑50 (MQ=255) tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 2:3476188/1‑49 (MQ=255) ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa > 2:664319/1‑50 (MQ=255) ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa > 1:138298/1‑50 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg < 1:4826927/48‑1 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa < 2:1225310/49‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 1:2335949/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt > 2:2646551/1‑50 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt > 2:3838433/1‑50 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 2:3855896/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt > 1:1496124/1‑50 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc < 1:1050440/49‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc < 1:5454223/49‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa < 2:2797265/50‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa < 2:2715176/50‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:2117895/1‑50 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:3816122/1‑50 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:1396758/1‑49 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt < 2:1255489/50‑1 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt < 2:1792795/50‑1 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt < 2:1703998/50‑1 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 1:5589906/1‑50 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa < 1:4100586/50‑1 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 2:3689383/1‑50 (MQ=255) tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa < 1:4513555/50‑1 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa > 1:4163539/1‑49 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa > 1:2698733/1‑49 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa > 2:3257388/1‑49 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa < 1:4708459/49‑1 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa < 1:3708146/50‑1 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa < 1:4438747/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 2:362358/1‑49 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 1:2184732/1‑49 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 2:4602580/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 1:1555480/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 1:2846158/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 1:3323403/50‑1 (MQ=255) aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 2:3962028/1‑48 (MQ=255) cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc > 1:2019688/1‑50 (MQ=255) cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc > 1:1077390/1‑50 (MQ=255) tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt > 1:3767598/1‑50 (MQ=255) tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt > 1:2511186/1‑50 (MQ=255) gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt > 1:1928723/1‑50 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg < 2:2550215/46‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc < 2:2379944/47‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt < 1:1763423/50‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt < 1:3004445/49‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt < 2:2192783/48‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt < 2:5352866/48‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt < 2:5467394/48‑1 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 2:1993054/50‑1 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 2:2445278/50‑1 (MQ=255) tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:5560809/1‑50 (MQ=255) tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 1:4605237/1‑50 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:1917960/1‑49 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 1:2646714/1‑49 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:2696036/1‑49 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:2818010/1‑49 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt < 2:1970549/49‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa < 1:1227228/50‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa < 2:57888/50‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa < 2:5676369/50‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa > 1:245931/1‑50 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa > 2:2230740/1‑50 (MQ=255) cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc > 2:4980249/1‑50 (MQ=255) aGGTACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg > 2:748628/1‑50 (MQ=255) aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg > 1:5512393/1‑50 (MQ=255) ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt > 2:2822640/1‑50 (MQ=255) ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt > 2:2494863/1‑50 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt > 2:2370843/1‑50 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt < 1:4594334/50‑1 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg < 1:4931761/50‑1 (MQ=255) aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc < 1:5129360/50‑1 (MQ=255) aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc < 1:2075236/50‑1 (MQ=255) aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc > 1:4280452/1‑50 (MQ=255) tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGGTACGTTGCTg > 2:2953943/1‑50 (MQ=255) tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg > 2:911064/1‑50 (MQ=255) ttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg > 2:162214/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATCCCAAAACAGCTTTCGCTACGTTGCTg < 1:3645094/48‑1 (MQ=38) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg < 2:5086886/49‑1 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg < 1:633224/48‑1 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg < 1:837789/48‑1 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 1:965977/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 1:5310617/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 2:1229112/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 1:3608182/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCCACGTTGCTg < 1:2391119/48‑1 (MQ=38) ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt > 2:4166684/1‑50 (MQ=255) ccTGATGTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc < 2:3386443/49‑1 (MQ=255) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt < 2:4343736/49‑1 (MQ=255) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc > 2:760818/1‑50 (MQ=255) tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg > 2:4496237/1‑50 (MQ=255) tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg > 1:3663321/1‑50 (MQ=255) gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt > 2:717183/1‑50 (MQ=255) | CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT > NC_000913/3090235‑3090328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |