Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,816,579 G→A intergenic (‑30/‑97) rph ← / → yicC truncated RNase PH/UPF0701 family protein YicC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,816,5790GA100.0% 690.3 / NA 175intergenic (‑30/‑97)rph/yicCtruncated RNase PH/UPF0701 family protein YicC
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (73/102);  total (73/102)

Only 100 of 175 total aligned reads displayed.

CGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGG  >  NC_000913/3816533‑3816625
                                              |                                              
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt                                              <  1:1526195/49‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt                                              <  2:146670/49‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt                                              <  2:1935611/49‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg                                             >  1:4328470/1‑50 (MQ=255)
  gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg                                           <  1:953867/50‑1 (MQ=255)
  gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg                                           <  2:4439818/50‑1 (MQ=255)
   ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg                                           >  1:5084398/1‑49 (MQ=255)
   ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg                                           >  2:4986325/1‑49 (MQ=255)
   ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg                                           >  2:2929490/1‑49 (MQ=255)
    ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa                                         <  1:5615190/50‑1 (MQ=255)
    ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa                                         <  1:4177571/50‑1 (MQ=255)
    ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa                                         >  1:2643661/1‑50 (MQ=255)
      gctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt                                        >  1:1659784/1‑49 (MQ=255)
       ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt                                        <  2:2708662/48‑1 (MQ=255)
       ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta                                      <  2:811104/50‑1 (MQ=255)
       ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta                                      <  1:2578544/50‑1 (MQ=255)
       ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta                                      >  2:2765697/1‑50 (MQ=255)
        tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta                                      >  2:4147669/1‑49 (MQ=255)
        tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta                                      >  1:1841274/1‑49 (MQ=255)
          gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata                                    <  1:4443352/49‑1 (MQ=255)
          gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATAc                                   <  1:3435103/50‑1 (MQ=255)
          gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATAc                                   <  1:763661/50‑1 (MQ=255)
           aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  <  2:2619588/50‑1 (MQ=255)
           aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  <  1:3139245/50‑1 (MQ=255)
           aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  <  1:3291500/50‑1 (MQ=255)
           aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  >  1:3775429/1‑50 (MQ=255)
           aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  <  2:4848063/50‑1 (MQ=255)
           aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  <  1:5645281/50‑1 (MQ=255)
            cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACgg                                 <  1:5406052/50‑1 (MQ=255)
            cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  >  2:3429337/1‑49 (MQ=255)
            cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg                                  >  2:3860681/1‑49 (MQ=255)
             gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa                                >  1:1344112/1‑50 (MQ=255)
              cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc                               <  2:5681500/50‑1 (MQ=255)
               atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt                              <  2:1109520/50‑1 (MQ=255)
               atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt                              >  1:4464859/1‑50 (MQ=255)
               atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt                              <  1:1052035/50‑1 (MQ=255)
               atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt                              >  2:3357636/1‑50 (MQ=255)
                tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt                             >  1:944749/1‑50 (MQ=255)
                tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt                             <  2:4738255/50‑1 (MQ=255)
                tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt                             <  1:546417/50‑1 (MQ=255)
                tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt                             <  2:891746/50‑1 (MQ=255)
                tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt                             <  1:4241062/50‑1 (MQ=255)
                 atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc                            >  1:3894540/1‑50 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc                           >  1:503331/1‑50 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc                           <  1:5164027/50‑1 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc                           >  1:4837105/1‑50 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc                           <  2:4780110/50‑1 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc                           <  2:4772436/50‑1 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc                           <  2:442980/50‑1 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc                            <  2:1990459/49‑1 (MQ=255)
                  ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc                            <  1:4492619/49‑1 (MQ=255)
                   tGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg                          >  2:3976845/1‑50 (MQ=255)
                    gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg                         >  1:4365544/1‑50 (MQ=255)
                    gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg                          <  1:1935272/49‑1 (MQ=255)
                     aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc                        >  2:3055571/1‑50 (MQ=255)
                     aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc                        <  1:2158080/50‑1 (MQ=255)
                     aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc                        <  2:1626547/50‑1 (MQ=255)
                     aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc                        <  2:5666252/50‑1 (MQ=255)
                     aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc                        <  2:5237655/50‑1 (MQ=255)
                     aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg                         <  2:4496746/49‑1 (MQ=255)
                      aaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcg                       >  2:5060160/1‑50 (MQ=255)
                       aTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcgg                      >  1:3933208/1‑50 (MQ=255)
                         ctcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt                     >  1:2511994/1‑49 (MQ=255)
                         ctcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt                     >  2:5475568/1‑49 (MQ=255)
                            cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa                   <  2:1218026/48‑1 (MQ=255)
                            cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAtt                 <  1:2873726/50‑1 (MQ=255)
                            cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt                  <  1:3445979/49‑1 (MQ=255)
                             ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc                <  2:4212261/50‑1 (MQ=255)
                             ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc                >  2:3571623/1‑50 (MQ=255)
                             ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAGTc                <  2:2943935/50‑1 (MQ=255)
                              gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc               <  2:2620465/50‑1 (MQ=255)
                              gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc               >  1:3585907/1‑50 (MQ=255)
                              gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc               >  1:1316046/1‑50 (MQ=255)
                              gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc               <  2:1857882/50‑1 (MQ=255)
                               cTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc               >  1:1713864/1‑49 (MQ=255)
                               cTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCt              <  1:3085465/50‑1 (MQ=255)
                                 tGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt            >  2:5426990/1‑50 (MQ=255)
                                 tGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt            >  1:5594168/1‑50 (MQ=255)
                                  gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTa             <  2:5175693/48‑1 (MQ=255)
                                  gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt            <  2:2405308/49‑1 (MQ=255)
                                  gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc           >  1:5410347/1‑50 (MQ=255)
                                   aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc          >  1:2992997/1‑50 (MQ=255)
                                   aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc          <  1:1157544/50‑1 (MQ=255)
                                    aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt         <  1:1258944/50‑1 (MQ=255)
                                    aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt         <  2:731312/50‑1 (MQ=255)
                                    aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt         <  1:273429/50‑1 (MQ=255)
                                     aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt         >  2:4579070/1‑49 (MQ=255)
                                     aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt         >  1:2266499/1‑49 (MQ=255)
                                      cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa       <  1:4031981/50‑1 (MQ=255)
                                      cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa       >  1:1637004/1‑50 (MQ=255)
                                      cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa       <  2:5085258/50‑1 (MQ=255)
                                      cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa       >  2:659688/1‑50 (MQ=255)
                                      cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCAGa       >  1:5496909/1‑50 (MQ=255)
                                       aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc      <  1:4872263/50‑1 (MQ=255)
                                        aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACa     <  1:2585753/50‑1 (MQ=255)
                                        aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACa     <  2:2235028/50‑1 (MQ=255)
                                         aTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc      >  1:1740716/1‑48 (MQ=255)
                                         aTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACaa    <  1:5574743/50‑1 (MQ=255)
                                          tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg   >  2:4513034/1‑50 (MQ=255)
                                          tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg   <  1:1132598/50‑1 (MQ=255)
                                              |                                              
CGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGG  >  NC_000913/3816533‑3816625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑