mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,316,813 | 0 | G | A | 72.2% | 267.0 / 131.8 | 151 | A213T (GCA→ACA) | rcsB | DNA‑binding transcriptional activator RcsB |
| * | NC_000913 | 1,715,296 | 0 | C | T | 72.0% | 133.5 / 79.2 | 93 | L198L (CTG→CTA) | pdxY | pyridoxal kinase 2 |
| * | NC_000913 | 2,872,825 | 0 | C | . | 71.3% | 156.3 / 147.5 | 94 | intergenic (‑5/+189) | ftsB/ygbE | cell division protein FtsB/conserved inner membrane protein YgbE |
| * | NC_000913 | 34,111 | 1 | . | T | 70.7% | 412.5 / 163.8 | 140 | intergenic (+73/‑189) | carB/caiF | carbamoyl phosphate synthetase subunit beta/DNA‑binding transcriptional activator CaiF |
| * | NC_000913 | 2,342,616 | 0 | G | A | 64.2% | 127.3 / 149.2 | 123 | V518V (GTC→GTT) | yfaL | putative autotransporter adhesin YfaL |
| * | NC_000913 | 143,103 | 0 | G | A | 58.5% | 101.9 / 189.2 | 142 | E109K (GAG→AAG) | yadG | putative ABC transporter ATP‑binding protein YadG |
| * | NC_000913 | 3,423,297 | 0 | G | C | 50.0% | 27.9 / 25.8 | 34 | intergenic (+103/+126) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 3,423,294 | 0 | T | C | 39.6% | 77.0 / 18.9 | 53 | intergenic (+100/+129) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 3,423,287 | 0 | G | C | 37.3% | 99.4 / 37.4 | 67 | intergenic (+93/+136) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 3,423,290 | 0 | A | C | 34.4% | 74.7 / 16.6 | 62 | intergenic (+96/+133) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.9% | 374.0 / inf | 295 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,350,844 | 0 | A | C | 28.3% | 372.2 / 16.0 | 159 | L728V (TTA→GTA) | arcB | sensory histidine kinase ArcB |
| * | NC_000913 | 599,576 | 0 | T | G | 27.5% | 211.3 / 22.9 | 103 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 3,261,055 | 0 | A | C | 27.1% | 228.9 / 12.1 | 97 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| * | NC_000913 | 1,911,754 | 0 | T | G | 26.6% | 232.8 / 10.9 | 109 | T275P (ACC→CCC) | htpX | zinc dependent endoprotease |
| * | NC_000913 | 3,350,853 | 0 | A | C | 26.5% | 321.5 / 18.4 | 148 | S725A (TCA→GCA) | arcB | sensory histidine kinase ArcB |
| * | NC_000913 | 802,118 | 0 | A | C | 26.5% | 266.5 / 13.6 | 121 | T78P (ACC→CCC) | ybhI | putative tricarboxylate transporter |
| * | NC_000913 | 3,585,086 | 0 | A | C | 26.4% | 271.1 / 10.4 | 111 | Y580D (TAC→GAC) | ggt | glutathione hydrolase proenzyme |
| * | NC_000913 | 987,494 | 0 | T | G | 25.9% | 327.5 / 20.0 | 137 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 624,589 | 0 | T | C | 25.1% | 340.5 / 124.1 | 167 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1994264 = | 168 (1.130) | 225 (2.130) +ATTTCTAATGTCGT |
3/70 | 9.4 | 69.6% | coding (443/1833 nt) | uvrC | excision nuclease subunit C |
| ? | NC_000913 | 3208976 = | 109 (0.730) | coding (953/1464 nt) | ttdT | L‑tartrate:succinate antiporter | |||||
| * | ? | NC_000913 | 4168431 = | 0 (0.000) | 3 (0.030) | 3/74 | 9.8 | 100% | noncoding (60/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913 | 4209845 = | NA (NA) | noncoding (72/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913 | 4168431 = | 0 (0.000) | 3 (0.030) | 3/74 | 9.8 | 100% | noncoding (60/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913 | 4168443 = | 0 (0.000) | noncoding (72/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | 3943494 = | NA (NA) | 3 (0.030) | 3/74 | 9.8 | NA | noncoding (60/76 nt) | gltU | tRNA‑Glu |
| ? | NC_000913 | 3943506 = | NA (NA) | noncoding (72/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729385 | 0 (0.000) | 3 (0.030) | 3/74 | 9.8 | 100% | noncoding (60/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 4168443 = | 0 (0.000) | noncoding (72/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729385 | 0 (0.000) | 3 (0.030) | 3/74 | 9.8 | 100% | noncoding (60/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 3943506 = | NA (NA) | noncoding (72/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729385 | 0 (0.000) | 3 (0.030) | 3/74 | 9.8 | 100% | noncoding (60/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 2729373 | 0 (0.000) | noncoding (72/76 nt) | gltW | tRNA‑Glu | |||||