| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 23 [0] | [0] 20 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 20 (0.680) | 16/96 | 0.4 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > NC_000913/20564‑20609 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:2017656/1‑50TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:1301263/50‑1 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:189220/1‑49 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:696709/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCcc > 1:1827034/1‑47 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCCATat > 1:149730/1‑48 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:452452/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCATGTG > 1:650114/1‑49 GATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGTGTA > 1:959780/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCTACCTCCATGTGTA > 1:983375/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:2115326/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:1783225/49‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:1520437/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:1182003/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:850565/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:1155996/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:153826/49‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1498841/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1244555/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1197535/1‑48 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1124214/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:370929/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:556056/1‑50 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > NC_000913/20564‑20609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |