| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 23 [0] | [0] 23 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 23 (0.800) | 21/94 | 0.1 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603419‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > NC_000913/609352‑609398 CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGT < 1:482473/50‑1 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT < 1:965702/50‑1 TGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGC < 1:687927/50‑1 TGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:840567/1‑49 CACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCAT < 1:2180633/50‑1 CCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:646441/1‑50 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGG > 1:691056/1‑50 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTG > 1:2196965/1‑50 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:1673777/1‑50 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT < 1:2103977/50‑1 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:2128418/1‑50 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:552923/1‑50 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTC < 1:950441/50‑1 TATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG < 1:955451/50‑1 ATCATTGCCGGTTGGCGAGTAATCCCCGCCTATCCGGTTGTCAGGTCAG > 1:807875/1‑49 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGG < 1:1016385/49‑1 TTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGG < 1:23647/50‑1 GTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGC < 1:1318451/50‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT > 1:705766/1‑50 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT > 1:1706203/1‑50 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT < 1:100614/50‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACC < 1:1843276/49‑1 CGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG < 1:1199294/50‑1 CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603419‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > NC_000913/609352‑609398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |