Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 819,776 Δ62,977 bp ybhL–deoR 57 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 819776 882752 62977 36 [0] [0] 37 ybhL–deoR ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 819775NA (NA)35 (1.170) 32/98 0.0 100% noncoding (17/27 nt) REPt74 REPt74
?NC_000913 882753 = 0 (0.000)intergenic (‑19/+39) deoR/ybjG DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase

CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/819727‑819775
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC  >  NC_000913/882753‑882799
                                                                                                
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT                                                <  1:1582538/50‑1
    CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA                                            <  1:1284613/50‑1
     GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG                                           >  1:2028466/1‑50
      GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC                                          >  1:1108591/1‑50
         AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCAGCGCTTTGAAGCGAG                                       <  1:163477/50‑1
         AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG                                       >  1:417608/1‑50
           ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC                                     <  1:1580476/50‑1
             GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC                                   >  1:2196922/1‑50
                 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA                               <  1:1819626/50‑1
                     TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC                            >  1:2106401/1‑49
                       TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA                          <  1:2195412/49‑1
                       TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA                          >  1:816314/1‑49
                        TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA                        >  1:1258546/1‑50
                          TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT                      >  1:685831/1‑50
                           GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT                     >  1:1586223/1‑50
                           GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT                      <  1:1908129/49‑1
                              AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT                   <  1:1631201/49‑1
                               GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA                 <  1:1213265/50‑1
                               GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT                  <  1:100257/49‑1
                                CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG                <  1:2190592/50‑1
                                 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGC               <  1:1184600/50‑1
                                 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG                >  1:324532/1‑49
                                   GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAG             <  1:946172/50‑1
                                      AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA              >  1:1508521/1‑46
                                       AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT         <  1:953685/50‑1
                                       AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT         <  1:904490/50‑1
                                       AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT         <  1:182864/50‑1
                                        GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC        <  1:1810443/50‑1
                                        GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT         >  1:1765317/1‑49
                                        GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT         >  1:1040034/1‑49
                                         GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA       <  1:1068403/50‑1
                                           ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT     <  1:793147/50‑1
                                            CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC    <  1:239540/50‑1
                                             CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA   <  1:947297/50‑1
                                              GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC  <  1:446858/50‑1
                                                                                                
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/819727‑819775
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC  >  NC_000913/882753‑882799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.