Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	997,868	Δ6,818 bp		[elfA]–ycbF	[elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	997868	1004685	6818	37 [0]	[0] 37	[elfA]–ycbF	[elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 997867	0 (0.000)	37 (1.230)	31/98	0.0	100%	intergenic (‑355/‑1)	ssuE/elfA	NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit
	?	NC_000913	1004686 =	0 (0.000)					intergenic (+29/‑82)	ycbF/pyrD	putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2

GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/997820‑997867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA  >  NC_000913/1004686‑1004730                                                                                               GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT                                             >  1:1306157/1‑50 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT                                             >  1:1686204/1‑50  TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT                                            <  1:233686/50‑1   CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG                                           >  1:85969/1‑50     TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC                                         <  1:349749/50‑1      TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG                                        >  1:722219/1‑50           GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT                                   >  1:666326/1‑50           GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT                                   >  1:1852785/1‑50             CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA                                 <  1:2082833/50‑1              ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA                                >  1:2222561/1‑50              ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA                                >  1:2155431/1‑50                  TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC                            >  1:551353/1‑50                  TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC                            <  1:1798079/50‑1                  TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC                             <  1:1570710/49‑1                       TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT                       >  1:1370304/1‑50                        TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG                      >  1:210521/1‑50                         TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG                      <  1:1811317/49‑1                          ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT                    >  1:123078/1‑50                          ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG                     <  1:1313783/49‑1                           CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC                   <  1:630701/50‑1                            GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC                  <  1:611593/50‑1                            GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC                  >  1:2248080/1‑50                               GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA               >  1:1172605/1‑50                                AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC              <  1:809818/50‑1                                 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT             <  1:16929/50‑1                                 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT             >  1:777793/1‑50                                 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT             >  1:88095/1‑50                                  ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC            <  1:630214/50‑1                                    CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG           >  1:2194507/1‑49                                    CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG           >  1:944187/1‑49                                     AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA         <  1:674618/50‑1                                        ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA       >  1:1010609/1‑49                                        ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA       >  1:992322/1‑49                                         TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATA     <  1:845560/50‑1                                           ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT   <  1:1317369/50‑1                                           ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA    <  1:1754367/49‑1                                            TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA  <  1:681926/50‑1                                                                                               GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/997820‑997867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA  >  NC_000913/1004686‑1004730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.