| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 29 [0] | [0] 28 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 28 (0.950) | 22/96 | 0.1 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG > NC_000913/1398623‑1398668 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTCTT < 1:1525448/49‑1 ACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTC > 1:674192/1‑50 TAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC > 1:1117056/1‑50 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTT < 1:1673096/50‑1 ATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:2152236/1‑50 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACA < 1:724438/49‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:2129931/49‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:1176025/49‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAA > 1:662182/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG < 1:155942/50‑1 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC < 1:2240352/49‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:723779/1‑50 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTT < 1:369429/50‑1 AGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT < 1:2086346/50‑1 AGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT < 1:397749/50‑1 GCAAACGCTATTACAGGGTCTCCTTACATCAACTGTCAACGCAGTTTGTA < 1:1546859/50‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTA < 1:1271780/50‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTA < 1:2000523/50‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT > 1:1646741/1‑49 CAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAA > 1:395969/1‑50 AAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAT < 1:1547787/50‑1 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATT < 1:1105760/50‑1 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATT < 1:1095206/50‑1 ACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA < 1:2140294/50‑1 ACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA < 1:1309933/50‑1 CGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA < 1:311283/50‑1 GCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAA < 1:580889/50‑1 TATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:687264/1‑47 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG < 1:857280/48‑1 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG > NC_000913/1398623‑1398668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |