BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,400,325	Δ81,931 bp		[abgT]–[azoR]	87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1400325	1482255	81931	26 [0]	[0] 26	[abgT]–[azoR]	[abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1400324	0 (0.000)	26 (0.870)	21/98	0.2	100%	coding (1450/1527 nt)	abgT	p‑aminobenzoyl glutamate:H(+) symporter
*	?	NC_000913	1482256 =	0 (0.000)	26 (0.870)	21/98	0.2	100%	coding (605/606 nt)	azoR	FMN dependent NADH:quinone oxidoreductase

CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400275‑1400324

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT  >  NC_000913/1482256‑1482304

CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA                                                 <  1:674552/50‑1

    TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                               <  1:64749/48‑1

    TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                               <  1:647114/48‑1

      GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG                                            <  1:1350753/49‑1

            CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT                                     <  1:488565/50‑1

             CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG                                    <  1:1592447/50‑1

             CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG                                    >  1:2056253/1‑50

                 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT                                <  1:1268936/50‑1

                  AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC                               <  1:187878/50‑1

                   GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG                              <  1:260020/50‑1

                     TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT                            <  1:606134/50‑1

                         ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT                        <  1:391156/50‑1

                         ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT                        >  1:365469/1‑50

                          CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG                       <  1:288009/50‑1

                          CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG                       >  1:880505/1‑50

                          CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG                       <  1:253442/50‑1

                           GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC                      >  1:1228589/1‑50

                                      tcGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTC             <  1:1621156/48‑1

                                       cGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT              >  1:600666/2‑48

                                            CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG       >  1:721250/1‑50

                                             CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT      >  1:1930121/1‑50

                                              ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG     >  1:2188859/1‑50

                                              ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG     >  1:1270961/1‑50

                                              ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG     <  1:945742/50‑1

                                                 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT  >  1:861815/1‑50

                                                 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT   <  1:1940290/49‑1

CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400275‑1400324

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT  >  NC_000913/1482256‑1482304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.