Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,466,545 Δ9,634 bp [intS]–[ypdJ] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2466545 2476178 9634 34 [0] [0] 33 [intS]–[ypdJ] [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24665440 (0.000)32 (1.070) 27/98 0.0 100% intergenic (+161/‑1) argW/intS tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
?NC_000913 2476179 = 0 (0.000)coding (86/141 nt) ypdJ CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ

GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466500‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  NC_000913/2476179‑2476223
                                                                                          
GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                          >  1:1076365/1‑50
 GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC                                         <  1:1975510/50‑1
 GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC                                         >  1:88489/1‑50
  GTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC                                         >  1:1854956/1‑49
        AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG                                  >  1:1561911/1‑50
         GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC                                 >  1:1963122/1‑50
          TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC                                >  1:1626221/1‑50
          TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC                                >  1:2149895/1‑50
            GATAAAATAATTTTACCCACCGGATTTTTACCCTAGCGCCATACAGCCT                               >  1:2017261/1‑49
            GATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTC                              <  1:1426879/50‑1
             ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                             <  1:1323191/50‑1
             ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                             >  1:486445/1‑50
              TAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCAC                            <  1:1195920/50‑1
                AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACAC                          <  1:190180/50‑1
                AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACAC                          >  1:2087020/1‑50
                 AATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACT                         >  1:1387830/1‑50
                       TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                     >  1:496761/1‑48
                         TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG                 >  1:1005516/1‑50
                          ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC                >  1:475403/1‑50
                           CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC               >  1:756584/1‑50
                             CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTG             >  1:977372/1‑50
                             CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTG             >  1:825539/1‑50
                             CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTG             >  1:1832913/1‑50
                              ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT            <  1:2056185/50‑1
                              ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT            >  1:1192604/1‑50
                              ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGACGCCTGT            >  1:1634683/1‑50
                               CCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTC           <  1:494026/50‑1
                                CGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCA          <  1:789094/50‑1
                                   ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT       <  1:30143/50‑1
                                       TTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT    >  1:2115817/1‑49
                                       TTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT    >  1:816149/1‑49
                                         ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  <  1:672294/49‑1
                                                                                          
GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466500‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  NC_000913/2476179‑2476223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.