| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,651,293 | Δ2,422 bp | [yhiS]–yhiS | [yhiS], insH‑11, yhiS | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3651293 | 3653714 | 2422 | 50 [0] | [0] 51 | [yhiS]–yhiS | [yhiS],insH‑11,yhiS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3651292 | 0 (0.000) | 50 (1.740) | 35/94 | 0.0 | 100% | pseudogene (2/746 nt) | yhiS | putative uncharacterized protein YhiS |
| ? | NC_000913 | 3653715 = | 0 (0.000) | intergenic (+2/‑246) | yhiS/slp | putative uncharacterized protein YhiS/starvation lipoprotein | |||||
CAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3651245‑3651292‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATG > NC_000913/3653715‑3653761 CAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATA < 1:328050/49‑1CAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATA < 1:1514006/49‑1CAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATA < 1:1306155/49‑1 AATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATT < 1:794213/50‑1 TTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGA > 1:1251049/1‑50 TTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGA > 1:1894899/1‑50 TTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGAT > 1:1888674/1‑50 TTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGAT > 1:1835913/1‑50 TAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGAT < 1:1310306/49‑1 TAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGAT < 1:391138/49‑1 TAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGAT < 1:2149817/49‑1 AAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATT < 1:774039/49‑1 AACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTAT > 1:32707/1‑50 AACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTA < 1:191731/49‑1 ACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTAT > 1:1259115/1‑49 ACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTAT > 1:2079950/1‑49 ACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTAT > 1:277216/1‑49 TCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAG > 1:243454/1‑49 TCTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAG > 1:1213547/1‑49 CTTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAGCA > 1:396126/1‑50 TTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAGCAC > 1:1720790/1‑50 TTAGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAGCAC > 1:1932575/1‑50 AGCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAGCA < 1:431593/47‑1 GCATAAAACAAATGATGAATAAGGAATTTTATATTGATTATTAGCACTT > 1:1115758/1‑49 ATAAAACAAATGTTGAATAAGGAATTTTATATTGATTATTAGCACTTTA > 1:1528223/1‑49 AAACAAATGATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAAT > 1:1741665/1‑50 CAAATGATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCAT < 1:1873135/50‑1 AATGATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTG < 1:779146/50‑1 AATGATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTG < 1:695697/50‑1 AATGATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATT > 1:923431/1‑49 TGATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAA < 1:2161704/50‑1 GATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAA > 1:1493886/1‑49 ATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATA < 1:2196799/50‑1 ATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAAT > 1:1632190/1‑49 ATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAAT < 1:231323/49‑1 ATGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAAT > 1:2022320/1‑49 TGAATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATA > 1:2010263/1‑49 AATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAA < 1:397935/50‑1 ATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAA > 1:1776018/1‑50 ATAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAA > 1:2033828/1‑50 TAAGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAAT < 1:1786889/50‑1 AGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAG < 1:497451/50‑1 AGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAATA < 1:1278232/49‑1 AGGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAATA < 1:464392/49‑1 GGAATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGA < 1:1862651/50‑1 AATTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATT < 1:1011646/50‑1 TTTTATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTT < 1:1827521/50‑1 TATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATG > 1:1198339/1‑50 TATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTAT < 1:262769/49‑1 TATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTAT < 1:1564048/49‑1 CAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3651245‑3651292‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATG > NC_000913/3653715‑3653761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |