| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 27 [0] | [0] 27 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 26 (0.870) | 26/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299582‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > NC_000913/4325166‑4325211 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:1135125/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:159364/1‑50 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC < 1:449970/50‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC < 1:1392847/49‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:1270735/50‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:907312/48‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:1838352/49‑1 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG > 1:1115713/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:649940/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:859762/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:1955015/1‑49 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA > 1:1018245/1‑50 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:2056326/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:134244/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:7390/1‑50 TTTCATAAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:999789/50‑1 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG > 1:909650/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:1745359/49‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:1669138/1‑50 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:331421/1‑49 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:730302/50‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT < 1:902472/49‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:1752989/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:2033725/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:2244659/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:1209616/48‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299582‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > NC_000913/4325166‑4325211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |