BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,496,676	Δ53,036 bp		intB–fimH	54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4496676	4549711	53036	35 [0]	[0] 35	intB–fimH	intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4496675	0 (0.000)	34 (1.160)	28/96	0.0	100%	intergenic (+186/‑75)	leuX/intB	tRNA‑Leu/KpLE2 phage‑like element; putative integrase
*	?	NC_000913	4549712 =	0 (0.000)	34 (1.160)	28/96	0.0	100%	intergenic (+2/+241)	fimH/gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter

TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4496628‑4496675

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA  >  NC_000913/4549712‑4549760

TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA                                                 <  1:735593/50‑1

TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG                                                  >  1:695317/1‑49

TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG                                                  >  1:1844711/1‑49

  GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA                                                <  1:1102392/49‑1

  GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA                                                <  1:249246/49‑1

   TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT                                              <  1:330386/50‑1

     TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA                                            <  1:1773773/50‑1

         CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG                                        <  1:1084279/50‑1

         CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG                                         <  1:302221/49‑1

         CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG                                         >  1:1660232/1‑49

              CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT                                   >  1:1284335/1‑50

               GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT                                   <  1:2015030/49‑1

                ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC                                 >  1:1378515/1‑50

                 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC                                 >  1:501829/1‑49

                   ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA                              >  1:1955287/1‑50

                      CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC                           >  1:971912/1‑50

                       TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT                          >  1:1193751/1‑50

                        TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG                         >  1:185119/1‑50

                        TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG                         >  1:582928/1‑50

                          TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG                        >  1:1277251/1‑49

                            CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC                     <  1:120248/50‑1

                             CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG                    <  1:112150/50‑1

                                CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA                 <  1:2955/50‑1

                                  GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA               >  1:628326/1‑50

                                   GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT              <  1:2212090/50‑1

                                       GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC          <  1:610592/50‑1

                                        GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT         <  1:2001243/50‑1

                                        GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT         <  1:1164082/50‑1

                                         AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT         >  1:1006241/1‑49

                                         AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT         >  1:1810981/1‑49

                                             CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC    >  1:2136548/1‑50

                                             CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG     <  1:1935117/49‑1

                                              GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC    >  1:1555646/1‑49

                                              GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC    >  1:902956/1‑49

                                               AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA  <  1:1598671/50‑1

TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4496628‑4496675

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA  >  NC_000913/4549712‑4549760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.