| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 44 [0] | [0] 44 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 36 (1.340) | 28/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
CAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565007‑565103 | cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:14083‑M1/1‑48 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:514662‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:2064501‑M1/50‑8 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:1232960‑M1/1‑41 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:1345519‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:1688484‑M1/1‑41 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:1857717‑M1/50‑15 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:360600‑M1/50‑19 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:1795048‑M1/1‑30 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:256126‑M1/1‑30 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:1008183‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:677458‑M1/50‑22 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 1:452851‑M1/1‑28 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:15439‑M1/1‑26 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:2087914‑M1/1‑26 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:1424917‑M1/1‑25 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:335653‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:984820‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 1:579441‑M1/47‑25 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 1:2092159‑M1/1‑22 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 1:1221841‑M1/50‑30 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:1581931‑M1/1‑20 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:629458‑M1/1‑19 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt > 1:1844190‑M1/1‑17 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:255259‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:1551645‑M1/50‑34 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg > 1:931889‑M1/1‑16 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:33052‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg < 1:2213401‑M1/49‑35 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc < 1:1444437‑M1/50‑37 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 1:1926907‑M1/50‑38 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 1:1706558‑M1/50‑38 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 1:588222‑M1/1‑13 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:1367091‑M1/50‑40 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:1320609‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:1359621‑M1/1‑9 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:1955142‑M1/1‑5 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:1485044‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1443925‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:540451‑M1/1‑2 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:44246‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:831097‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:350220‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:1396217‑M1/47‑47 (MQ=255) | CAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565007‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |