| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 42 [0] | [0] 41 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 31 (1.380) +CAGATAATTCAA |
25/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
ATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223045‑1223142 | tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:2180723‑M2/49‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAg < 1:1671412‑M2/2‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:1530905‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg < 1:1250292‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 1:262411‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:1612753‑M2/6‑1 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc < 1:1087448‑M2/8‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:1919315‑M2/9‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 1:690950‑M2/11‑1 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:2092212‑M2/31‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:592922‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:2145626‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:1483910‑M2/19‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:1984692‑M2/19‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg < 1:2206100‑M2/20‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:1260743‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:939433‑M2/23‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:1133541‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:651286‑M2/27‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:332541‑M2/27‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:1126106‑M2/27‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg > 1:125724‑M2/24‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:775045‑M2/23‑50 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:2081099‑M2/23‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:1856035‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt < 1:1432685‑M2/30‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:849274‑M2/31‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:392387‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:1694565‑M2/33‑1 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 1:559545‑M2/16‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:330420‑M2/14‑50 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1038356‑M2/10‑50 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:251116‑M2/42‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:1436199‑M2/42‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:1886301‑M2/42‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag < 1:1159027‑M2/44‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag < 1:395023‑M2/44‑1 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:1636795‑M2/4‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:1147972‑M2/47‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa < 1:1475631‑M2/49‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 1:645699/50‑1 (MQ=255) | ATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223045‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |