| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2066304 | NA (NA) | 27 (0.900) | 20/98 | 0.2 | 100% | noncoding (1050/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2080592 = | 0 (0.000) | intergenic (‑1/+197) | yeeA/sbmC | putative transporter YeeA/DNA gyrase inhibitor | |||||
GCGGTATACCCGGATTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > NC_000913/2080544‑2080640 | agcctatttagaccgtttcttcgccatttaaggcgttatccccagtttg > 1:1265210‑M2/49‑49 (MQ=255) ctatttagaccgtttcttcgccatttaaggcgttatccccagtttGCAg > 1:662342‑M2/46‑49 (MQ=255) ctatttagaccgtttcttcgccatttaaggcgttatccccagtttGCAg > 1:1798849‑M2/46‑49 (MQ=255) ctatttagaccgtttcttcgccatttaaggcgttatccccagtttGCAg > 1:1888235‑M2/46‑49 (MQ=255) tatttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGa > 1:437538‑M2/45‑49 (MQ=255) tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGaa < 1:701363‑M2/6‑1 (MQ=255) tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAAc > 1:207847‑M2/43‑50 (MQ=255) agaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTcc > 1:2226594‑M2/40‑50 (MQ=255) gaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTcc < 1:1549632‑M2/11‑1 (MQ=255) cgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTaa < 1:1343669‑M2/15‑1 (MQ=255) tttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATg < 1:1518607‑M2/17‑1 (MQ=255) cttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 1:128385‑M2/31‑46 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAtt < 1:1262825‑M2/22‑1 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAt < 1:2178874‑M2/21‑1 (MQ=255) ccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa > 1:613014‑M2/26‑49 (MQ=255) ccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa > 1:1353890‑M2/26‑49 (MQ=255) tttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc > 1:2013925‑M2/23‑50 (MQ=255) tttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc > 1:773133‑M2/23‑50 (MQ=255) ttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgcg > 1:742564‑M2/22‑50 (MQ=255) taaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgcgc > 1:390290‑M2/21‑50 (MQ=255) gttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATaa > 1:957293‑M2/15‑50 (MQ=255) gttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATaa > 1:980215‑M2/15‑50 (MQ=255) gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTc < 1:236986‑M2/46‑1 (MQ=255) gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTc > 1:1957278‑M2/5‑50 (MQ=255) gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTc < 1:1052035‑M2/46‑1 (MQ=255) gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTc > 1:964690‑M2/5‑50 (MQ=255) ttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCACAACTCATCTGTCgg > 1:714524‑M2/3‑50 (MQ=255) gcaGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGc > 1:447740/1‑49 (MQ=255) | GCGGTATACCCGGATTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > NC_000913/2080544‑2080640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |