| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 37 [0] | [0] 39 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 36 (1.250) | 31/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
CTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAAA > NC_000913/2998822‑2998918 | tagatttgttacactccgctatagctttcttcagatctttatagccca < 1:1823506‑M2/1‑1 (MQ=255)tagatttgttacactccgctatagctttcttcagatctttatagcccAc < 1:1446821‑M2/2‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACtt < 1:1074742‑M2/4‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa < 1:1709762‑M2/5‑1 (MQ=255) atttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:2083491‑M2/6‑1 (MQ=255) atttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:206239‑M2/6‑1 (MQ=255) gttacactccgctatagctttcttcagatctttatagcccACTTATTTa < 1:2215967‑M2/9‑1 (MQ=255) gttacactccgctatagctttcttcagatctttatagcccACTTATTTa < 1:1834986‑M2/9‑1 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaac < 1:95896‑M2/11‑1 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaa < 1:482635‑M2/10‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaacaa > 1:1753102‑M2/38‑50 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaac < 1:1897680‑M2/14‑1 (MQ=255) actccgctatagctttcttcagatctttatagcccACTTATTTAACAACt < 1:991488‑M2/15‑1 (MQ=255) actccgctatagctttcttcagatctttatagcccACTTATTTAACAACt < 1:841009‑M2/15‑1 (MQ=255) ctccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt < 1:2246596‑M2/16‑1 (MQ=255) ctccgctatagctttcttaagatctttatagcccACTTATTTAACAACtt < 1:2068408‑M2/16‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg < 1:921620‑M2/17‑1 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaa < 1:1802631‑M2/20‑1 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaa < 1:1021295‑M2/20‑1 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaa > 1:1815157‑M2/31‑49 (MQ=255) ctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa < 1:1310000‑M2/21‑1 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATa < 1:1627753‑M2/23‑1 (MQ=255) ctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgt > 1:1170498‑M2/24‑50 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:1255250‑M2/29‑1 (MQ=255) tcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTa > 1:1799149‑M2/18‑50 (MQ=255) cagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTa < 1:2032678‑M2/33‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:2154213‑M2/34‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:519289‑M2/36‑1 (MQ=255) tctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTgg > 1:677900‑M2/13‑50 (MQ=255) ctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTggg > 1:1012788‑M2/12‑50 (MQ=255) ttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt > 1:90315‑M2/10‑50 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTg < 1:50826‑M2/37‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt < 1:1652773‑M2/41‑1 (MQ=255) atagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt > 1:1776414‑M2/8‑50 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa > 1:2002492‑M2/5‑49 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAc < 1:1967258‑M2/46‑1 (MQ=255) cACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa > 1:1662511‑M2/2‑49 (MQ=255) aCTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaaaa < 1:1450199/50‑1 (MQ=255) aCTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaaaa < 1:291976/50‑1 (MQ=255) | CTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAAA > NC_000913/2998822‑2998918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |