| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,697,216 | T→C | intergenic (‑164/+57) | uidR ← / ← hdhA | DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,697,216 | 0 | T | C | 100.0% | 86.7 / NA | 23 | intergenic (‑164/+57) | uidR/hdhA | DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/15); total (8/15) | |||||||||||
AACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC > NC_000913/1697173‑1697262 | aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatg < 1:1352434/49‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:1156263/50‑1 (MQ=255) tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt < 1:91010/50‑1 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATcc < 1:2246679/50‑1 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc < 1:1169012/50‑1 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc < 1:532119/50‑1 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc > 1:494084/1‑50 (MQ=255) gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg < 1:1288450/50‑1 (MQ=255) tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt < 1:1447363/50‑1 (MQ=255) tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt < 1:908632/50‑1 (MQ=255) tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa < 1:318729/50‑1 (MQ=255) ttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa > 1:2078266/1‑49 (MQ=255) ttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa > 1:640178/1‑49 (MQ=255) ttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa > 1:113488/1‑49 (MQ=255) tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac < 1:152672/49‑1 (MQ=255) ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaaca < 1:622782/49‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg < 1:2173188/49‑1 (MQ=255) tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg > 1:1473013/1‑50 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt > 1:1902052/1‑50 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt < 1:681866/49‑1 (MQ=255) gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg > 1:1663114/1‑50 (MQ=255) agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg > 1:361044/1‑50 (MQ=255) aCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTc < 1:1815984/50‑1 (MQ=255) | AACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC > NC_000913/1697173‑1697262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |