| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,980,957 | (G)6→7 | coding (71/1386 nt) | yifK → | putative transporter YifK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,980,951 | 1 | . | G | 96.0% | 90.1 / ‑3.0 | 25 | coding (65/1386 nt) | yifK | putative transporter YifK |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (15/9); total (16/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980902‑3980995 | ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 1:1660843/50‑1 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg > 1:1807460/1‑50 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gg > 1:1355648/1‑50 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gggg > 1:2666430/1‑50 (MQ=255) tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑ggggg > 1:236024/1‑49 (MQ=255) cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gggggc < 1:1292670/49‑3 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCAtt < 1:1135881/50‑1 (MQ=255) ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTgg < 1:1807474/50‑1 (MQ=255) cTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCg > 1:1994787/1‑50 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGt < 1:798727/48‑1 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCgg > 1:159651/1‑50 (MQ=255) aGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGc > 1:154381/1‑50 (MQ=255) cGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGt > 1:292145/1‑50 (MQ=255) aCATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGttt < 1:177565/50‑1 (MQ=255) aCATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGtt > 1:19641/1‑49 (MQ=39) atatCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTAt > 1:1891466/1‑50 (MQ=255) tatCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATg > 1:362523/1‑50 (MQ=255) tatCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATg > 1:2347780/1‑50 (MQ=255) cGAACTCATCGCCCT‑GGTGGGGCACCATTGGCGTCGGCCTGTTTATgggg > 1:683354/1‑50 (MQ=39) gAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATggggg > 1:1222781/1‑50 (MQ=255) gAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATgggg < 1:859963/49‑1 (MQ=39) aCTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc < 1:2041844/50‑1 (MQ=255) cTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg > 1:2075815/1‑50 (MQ=255) cTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg < 1:2729306/50‑1 (MQ=255) cTCATCGCCCTGGG‑GGGGCACCATTGGCGTCAGCCTGTTTATGGGGgccg > 1:1249424/1‑50 (MQ=255) tCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:2052664/1‑50 (MQ=255) cATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:2572790/1‑49 (MQ=39) aTCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:2778904/1‑48 (MQ=39) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:2337591/49‑1 (MQ=39) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:175425/49‑1 (MQ=39) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa > 1:1239036/1‑50 (MQ=255) | CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980902‑3980995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |