BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	508,873	Δ40,744 bp		copA–[ylbE]	37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	508873	549616	40744	31 [0]	[0] 30	copA–[ylbE]	copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 508872	0 (0.000)	30 (0.800)	26/98	0.1	100%	intergenic (+313/+3)	ybaQ/copA	putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase
*	?	NC_000913	549617 =	0 (0.000)	30 (0.800)	26/98	0.1	100%	intergenic (+1/‑10)	ylbE/ylbF	DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF

CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/508825‑508872

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG  >  NC_000913/549617‑549663

CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG                                                <  1:900416/49‑1

 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG                                               >  1:1153344/1‑49

  TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA                                             <  1:973665/50‑1

     ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC                                          <  1:1813861/50‑1

        CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGC                                        <  1:2350944/49‑1

         CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA                                      >  1:887081/1‑50

            ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA                                   <  1:849863/50‑1

                GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT                               <  1:1357254/50‑1

                GCCACCCAAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT                               <  1:2444311/50‑1

                 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC                              <  1:2048753/50‑1

                 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC                              <  1:2698876/50‑1

                  CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA                             <  1:782736/50‑1

                         AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC                      >  1:606480/1‑50

                         AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC                      >  1:868984/1‑50

                         AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC                       <  1:519129/49‑1

                         AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT                        <  1:677008/48‑1

                           GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC                    >  1:2411338/1‑50

                            CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT                   >  1:2199799/1‑50

                             AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG                  <  1:2459630/50‑1

                             AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG                  <  1:1772631/50‑1

                               CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT                >  1:2671481/1‑50

                                GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT               <  1:975916/50‑1

                                   TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC             >  1:1114879/1‑49

                                     CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG          <  1:992488/50‑1

                                      GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGT         <  1:895382/50‑1

                                       CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTA        <  1:1663102/50‑1

                                          TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG       >  1:367213/1‑48

                                           GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG    >  1:2015163/1‑50

                                             TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG  <  1:1308865/50‑1

                                              GTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG  >  1:1851690/1‑49

CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/508825‑508872

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG  >  NC_000913/549617‑549663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.