| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 49 [0] | [0] 50 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 47 (1.280) | 34/96 | 0.0 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687812‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > NC_000913/689045‑689093 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT > 1:1864709/1‑50ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT > 1:1982508/1‑50ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCC < 1:2517512/49‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT < 1:2250072/49‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG > 1:488411/1‑50 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:9030/50‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:2144398/50‑1 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG < 1:1215809/50‑1 CTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:550394/1‑49 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAAC < 1:2414111/50‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAA < 1:2469845/49‑1 ACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT > 1:328957/1‑50 ACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT > 1:856560/1‑50 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT < 1:2424048/50‑1 TTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:850279/1‑49 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTT < 1:1910365/48‑1 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTT < 1:238977/48‑1 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG < 1:2008043/49‑1 TTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT > 1:2409491/1‑50 TTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT > 1:2614487/1‑50 TTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT < 1:1319841/50‑1 TGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTG < 1:1649056/49‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:1681006/50‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:334547/50‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:1828514/50‑1 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA < 1:1279303/50‑1 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA < 1:2644675/50‑1 GTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAA < 1:457481/50‑1 GTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAA < 1:368216/50‑1 TGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATG > 1:2548526/1‑49 TGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATG > 1:1628209/1‑49 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT < 1:899732/49‑1 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT > 1:533892/1‑49 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAA < 1:1900848/50‑1 TGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:2731548/1‑49 TGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:653909/1‑49 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:383069/1‑50 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:616959/1‑50 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT < 1:2738296/50‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT < 1:448372/50‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT > 1:2555686/1‑50 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:146723/48‑1 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:2531443/1‑50 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT < 1:1245094/49‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTG < 1:2487004/49‑1 GGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCT < 1:2004255/50‑1 AGGTGCCTTAGGTAACATTTAGTTAGGCTGAATGTAAAGATATTGCTGTT < 1:1426523/50‑1 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > 1:158222/1‑50 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT < 1:2632236/49‑1 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687812‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > NC_000913/689045‑689093 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |