| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 44 [0] | [0] 44 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 43 (1.170) | 31/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2440995/1‑49 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:2201977/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:464902/50‑1 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1421030/1‑50 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1971360/1‑49 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:357254/50‑1 GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA > 1:723435/1‑50 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:977094/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:1835466/1‑50 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:1889011/50‑1 TTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:572842/1‑49 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:1551522/1‑50 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC > 1:2102053/1‑50 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC > 1:691464/1‑50 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:2306536/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:1268418/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:1710535/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:893664/49‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG < 1:1509561/50‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG < 1:1280531/50‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 1:99299/1‑49 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAG > 1:2364944/1‑50 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:2306939/1‑50 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:1083799/1‑49 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:1276812/1‑49 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:1353472/1‑49 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:2481719/50‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCAC < 1:766286/49‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:1715551/48‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:2533583/1‑50 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 1:1421572/50‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC > 1:1657562/1‑50 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG > 1:2340263/2‑50 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCTACATATGCGCGGC > 1:776384/1‑50 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC < 1:624114/50‑1 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1497394/1‑50 TATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2032565/1‑49 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2107183/1‑47 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:297715/1‑50 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:2768713/1‑49 TATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:164344/1‑50 TATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:867171/1‑50 TATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:97439/1‑50 TATAGCAATCAAACCGAACCCACATATGTGCGCCCAGATTGTTGACAAAG > 1:998960/1‑50 GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |