BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	819,776	Δ62,977 bp		ybhL–deoR	57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	819776	882752	62977	30 [0]	[0] 30	ybhL–deoR	ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 819775	NA (NA)	30 (0.800)	27/98	0.1	100%	noncoding (17/27 nt)	REPt74	REPt74
*	?	NC_000913	882753 =	0 (0.000)	30 (0.800)	27/98	0.1	100%	intergenic (‑19/+39)	deoR/ybjG	DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase

CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/819727‑819775

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG  >  NC_000913/882753‑882800

CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT                                                 <  1:1785233/50‑1

 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT                                                <  1:2780213/50‑1

      GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC                                           <  1:2551261/50‑1

       CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC                                           >  1:1579197/1‑49

         AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG                                        >  1:2418153/1‑50

          AACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGC                                       <  1:1440357/50‑1

           ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC                                      <  1:787926/50‑1

            CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG                                     >  1:1762346/1‑50

            CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG                                     >  1:1942670/1‑50

              CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCTGCT                                   >  1:1587922/1‑50

                 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA                                 <  1:1235801/49‑1

                 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC                                  <  1:2753155/48‑1

                       TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA                           <  1:1265785/49‑1

                         TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA                         <  1:1856334/49‑1

                          TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC                        <  1:1928422/49‑1

                            TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT                      <  1:502997/49‑1

                              AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT                    >  1:35451/1‑49

                              AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT                    <  1:1362127/49‑1

                               GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA                  <  1:928869/50‑1

                                  GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG                 >  1:2371090/1‑48

                                    ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA               >  1:650572/1‑48

                                     TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG            <  1:2502133/50‑1

                                     TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG            <  1:1925261/50‑1

                                     TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA               >  1:268095/1‑47

                                      AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA               >  1:2260886/1‑46

                                       AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA           <  1:2394456/49‑1

                                       AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA           <  1:471439/49‑1

                                         GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA        <  1:1256910/50‑1

                                             CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA    <  1:163167/50‑1

                                               CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG  <  1:558338/50‑1

CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/819727‑819775

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG  >  NC_000913/882753‑882800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.