| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 36 [0] | [0] 36 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 36 (0.980) | 31/96 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA < 1:666281/50‑1ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA < 1:2722445/50‑1ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:165007/1‑50 CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTAC < 1:2066608/50‑1 CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:1233824/1‑49 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACA < 1:1773448/50‑1 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGG > 1:1050335/1‑50 CACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGT < 1:723994/50‑1 ACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTC > 1:385800/1‑50 ACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTC < 1:2052273/50‑1 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC < 1:1850275/48‑1 TTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA < 1:2756214/50‑1 TTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:2545011/1‑49 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:2186513/49‑1 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:1323436/49‑1 ATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACA < 1:66892/49‑1 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAA < 1:291600/50‑1 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACA < 1:905103/49‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTG < 1:2299845/50‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTG < 1:2530386/50‑1 CTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:1240439/1‑50 GTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTC > 1:1818072/1‑49 GTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTC > 1:1264382/1‑49 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAA > 1:1457417/1‑50 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCA < 1:1429642/49‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTC < 1:2051499/48‑1 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:1309132/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:1875611/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC < 1:1773902/49‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCA < 1:1629216/50‑1 ACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG < 1:2215016/49‑1 ACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTT < 1:986574/50‑1 CGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA > 1:596824/1‑49 GCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAA < 1:2638581/50‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT < 1:2352797/50‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGA < 1:981611/49‑1 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |