Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,400,325 Δ81,931 bp [abgT]–[azoR] 87 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1400325 1482255 81931 28 [0] [0] 28 [abgT]–[azoR] [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14003240 (0.000)27 (0.720) 20/98 0.4 100% coding (1450/1527 nt) abgT p‑aminobenzoyl glutamate:H(+) symporter
?NC_000913 1482256 = 0 (0.000)coding (605/606 nt) azoR FMN dependent NADH:quinone oxidoreductase

‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400275‑1400324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT  >  NC_000913/1482256‑1482303
                                                                                                   
aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT                                                 <  1:292661/49‑1
  CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT                                               <  1:965993/50‑1
    ATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                              >  1:2773924/1‑49
     TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC                                             <  1:1170186/49‑1
     TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC                                             <  1:2549686/49‑1
          AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC                                       <  1:1646428/50‑1
            ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA                                     >  1:1337393/1‑50
             CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT                                    <  1:1040480/50‑1
             CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT                                    <  1:54904/50‑1
              CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG                                   >  1:864076/1‑50
               GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC                                  >  1:907883/1‑50
               GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC                                  >  1:2613536/1‑50
               GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC                                  <  1:893757/50‑1
                ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT                                 >  1:247791/1‑50
                ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT                                 >  1:1848530/1‑50
                ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT                                 >  1:846669/1‑50
                 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG                                <  1:703964/50‑1
                  AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT                               <  1:924144/50‑1
                    GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC                              >  1:2358565/1‑49
                        CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG                         <  1:1943562/50‑1
                        CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG                         <  1:1225527/50‑1
                         CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC                        >  1:981657/1‑50
                                            GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT       <  1:2703991/50‑1
                                              CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT     <  1:1529442/50‑1
                                               ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG    >  1:2375071/1‑50
                                               ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG    <  1:1259025/50‑1
                                                 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT  >  1:1087436/1‑50
                                                                                                   
‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400275‑1400324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT  >  NC_000913/1482256‑1482303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.