| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 41 [0] | [0] 40 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 39 (1.070) | 35/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871980‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873467‑1873514 AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:322164/50‑1 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:998604/50‑1 AATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:1614252/1‑50 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:1036618/1‑49 TCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA < 1:1306842/50‑1 CGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:625176/1‑49 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA < 1:858311/50‑1 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:1672825/1‑48 AACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG > 1:224658/1‑50 AACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG < 1:12700/50‑1 ACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGC > 1:869029/1‑50 ACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGC < 1:2462917/50‑1 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:1437480/49‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGA < 1:625862/49‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATG < 1:1586896/48‑1 TTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:27681/1‑50 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT > 1:1779506/1‑50 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT < 1:1807208/49‑1 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:2610400/49‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATA < 1:647682/50‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATA > 1:443358/1‑50 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:2018964/48‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:2543170/48‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT > 1:2077014/1‑50 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:2006360/1‑50 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:2644275/1‑50 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCA < 1:357270/50‑1 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC > 1:2060979/1‑49 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC > 1:1468567/1‑49 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC < 1:2682085/49‑1 TAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA > 1:541075/1‑49 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAA < 1:2270981/50‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAT > 1:1575776/1‑48 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAT < 1:2481662/48‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGC < 1:216258/50‑1 GAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:1891111/1‑48 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAG > 1:1628642/1‑49 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAG > 1:678707/1‑49 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA < 1:164116/50‑1 AGATGCGTATAAAGCTTCCGATGATCGTTTATATGTCAATAAGCAGAAC > 1:954614/1‑49 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > 1:209766/1‑49 AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871980‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873467‑1873514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |