Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,466,545 Δ9,634 bp [intS]–[ypdJ] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2466545 2476178 9634 35 [0] [0] 35 [intS]–[ypdJ] [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24665440 (0.000)34 (0.910) 28/98 0.1 100% intergenic (+161/‑1) argW/intS tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
?NC_000913 2476179 = 0 (0.000)coding (86/141 nt) ypdJ CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ

TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466496‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAT  >  NC_000913/2476179‑2476227
                                                                                                  
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCT                                                  <  1:2195401/50‑1
  ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAG                                                <  1:1765072/50‑1
   CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGA                                               <  1:2295057/50‑1
    GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                              >  1:1720063/1‑50
     GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC                                             >  1:1288056/1‑50
       TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                           >  1:1894817/1‑50
         AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                         >  1:1920613/1‑50
          AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                         >  1:2296854/1‑49
           AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                         >  1:1364205/1‑48
             GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC                                     >  1:1073900/1‑50
             GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC                                     >  1:1398437/1‑50
              TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC                                    >  1:288205/1‑50
                GATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT                                   >  1:1860951/1‑49
                 ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                                 >  1:2309355/1‑50
                 ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                                 >  1:1593299/1‑50
                      ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                            >  1:1296519/1‑50
                      ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                            <  1:1252765/50‑1
                        AATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGA                          >  1:1995254/1‑50
                           TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                         >  1:633988/1‑48
                           TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                         >  1:675569/1‑48
                             TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG                     >  1:904456/1‑50
                             TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG                     >  1:1260292/1‑50
                             TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG                      <  1:2536810/49‑1
                              ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC                    >  1:480914/1‑50
                               CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC                   >  1:481169/1‑50
                                CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCT                  <  1:1527735/50‑1
                                         TTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTC         >  1:2427432/1‑50
                                            TACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTT       >  1:355434/1‑49
                                             ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA      >  1:2346373/1‑49
                                             ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA      >  1:252669/1‑49
                                             ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA      >  1:671664/1‑49
                                              CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAA     <  1:2494417/49‑1
                                               CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA   <  1:1261202/50‑1
                                                CTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAT  <  1:1231746/50‑1
                                                                                                  
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466496‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAT  >  NC_000913/2476179‑2476227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.