| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 52 [0] | [0] 52 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 52 (1.420) | 41/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCA > NC_000913/3770243‑3770289 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT > 1:1169692/1‑50GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT < 1:1548020/50‑1 ACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTC < 1:1000568/50‑1 AGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT < 1:450046/50‑1 TTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGA < 1:2327373/50‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:262001/50‑1 TGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAA < 1:1663791/50‑1 TGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAA < 1:1860295/50‑1 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT < 1:444475/50‑1 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:2477430/1‑49 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAA < 1:1097140/50‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA > 1:2563173/1‑49 AGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAA < 1:1393517/50‑1 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAG < 1:1024162/50‑1 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAG < 1:1948245/50‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA > 1:647896/1‑46 CCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:246414/1‑49 CCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:1734305/1‑49 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATA < 1:265284/50‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:2003359/49‑1 TTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT > 1:1910106/1‑50 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:1845711/1‑50 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:1135590/1‑50 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:1405371/1‑49 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG < 1:280091/49‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGC < 1:87556/49‑1 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT > 1:1676037/1‑50 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT > 1:594883/1‑50 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:1881608/49‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:2501283/49‑1 GAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:1336144/1‑49 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:1942065/50‑1 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:2580454/50‑1 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:2627557/1‑50 AAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCT < 1:2455162/50‑1 AAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCT > 1:2343198/1‑50 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > 1:2561607/1‑50 AATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT < 1:822366/50‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA < 1:1330353/50‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA > 1:1083281/1‑50 ATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT > 1:410454/1‑50 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATT < 1:1606082/50‑1 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT < 1:632524/49‑1 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT < 1:2119288/49‑1 TCAGTATGGCTCAATGATCCAAACAAAGATAATGCATCCAGCTGGTCAT < 1:805606/49‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:818259/1‑50 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC < 1:1925823/49‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC < 1:1565419/49‑1 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA < 1:958049/50‑1 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:1910668/1‑48 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:1871034/1‑48 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCA < 1:2465911/49‑1 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCA > NC_000913/3770243‑3770289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |