| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 30 [0] | [0] 29 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 27 (0.740) | 20/96 | 0.4 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15340‑15435 | aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:2315895‑M1/1‑49 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCtc > 1:325826‑M1/1‑48 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAACACTCtacc > 1:2639477‑M1/1‑46 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:2530568‑M1/50‑10 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:2405175‑M1/49‑11 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtacccccatgtg > 1:955705‑M1/1‑38 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:2193639‑M1/50‑13 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctccatgtg > 1:77386‑M1/1‑37 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:1020065‑M1/50‑14 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:438012‑M1/50‑16 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctccatgtgtat > 1:975325‑M1/1‑34 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:130658‑M1/50‑17 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:2182685‑M1/50‑17 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCAATCtacctcaatgtgttt > 1:1787643‑M1/1‑34 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtaccaccatgtggatga > 1:2495576‑M1/1‑33 (MQ=255) cTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccat < 1:2411518‑M1/50‑28 (MQ=255) cTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccat < 1:410015‑M1/50‑28 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatatt < 1:664547‑M1/50‑31 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:1113063‑M1/48‑29 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:1769874‑M1/50‑35 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:1281895‑M1/50‑35 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1496529‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1012411‑M1/1‑11 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:1821160‑M1/50‑41 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:91238‑M1/50‑43 (MQ=255) aCTCtgcctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:687115‑M1/49‑46 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:2474991‑M1/1‑4 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:124388‑M1/1‑2 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:2018981‑M1/1‑1 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:1560701‑M1/1‑1 (MQ=255) | AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15340‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |