| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 41 [0] | [0] 40 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 32 (1.030) | 23/82 | 0.1 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC > NC_000913/257858‑257955 | cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA < 1:92549‑M1/50‑1 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:2401954‑M1/1‑46 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:483880‑M1/1‑46 (MQ=255) tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:1297245‑M1/1‑45 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa < 1:2184935‑M1/50‑8 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa < 1:1293780‑M1/50‑8 (MQ=255) tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa < 1:85398‑M1/50‑9 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag < 1:2358165‑M1/49‑10 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag < 1:2536364‑M1/49‑10 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagcgcaaag < 1:1608778‑M1/49‑10 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat < 1:801624‑M1/50‑12 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat > 1:784929‑M1/1‑36 (MQ=255) tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg < 1:295594‑M1/50‑17 (MQ=255) tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg < 1:2036834‑M1/50‑17 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga > 1:2507886‑M1/1‑33 (MQ=255) tACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat > 1:2286596‑M1/1‑32 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc < 1:543711‑M1/50‑21 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:2521263‑M1/50‑25 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt > 1:112174‑M1/1‑26 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:901942‑M1/50‑25 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:1670389‑M1/50‑25 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt > 1:1315253‑M1/1‑26 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 1:704274‑M1/1‑23 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga < 1:684381‑M1/50‑29 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:325333‑M1/48‑27 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:1411738‑M1/50‑31 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg > 1:783281‑M1/1‑19 (MQ=255) cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:2670335‑M1/50‑33 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc > 1:2115312‑M1/1‑17 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc > 1:122930‑M1/1‑17 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc < 1:126643‑M1/50‑34 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctg < 1:1255014‑M1/49‑36 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc < 1:1731591‑M1/49‑38 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:627876‑M1/50‑43 (MQ=255) gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg > 1:267715‑M1/1‑7 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc > 1:540279‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc > 1:1269400‑M1/1‑6 (MQ=255) aGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg < 1:11486‑M1/50‑46 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt < 1:316888‑M1/50‑47 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc < 1:578123‑M1/50‑48 (MQ=255) tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca < 1:45225‑M1/50‑49 (MQ=255) | CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC > NC_000913/257858‑257955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |