| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 37 [0] | [0] 35 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 35 (0.940) | 26/98 | 0.1 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
GTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509512‑1509610 | gTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCt < 1:2402137/50‑1 (MQ=255) tATTCCGTCACTCTTACATCCGCGCCTGATGGCGGGTATATGGCTTCta > 1:1007534/1‑48 (MQ=19) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac > 1:813986‑M1/1‑45 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 1:190154‑M1/50‑8 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa > 1:1455383‑M1/1‑42 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:2555794‑M1/1‑41 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca < 1:2711551‑M1/50‑12 (MQ=255) ctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca > 1:2477060‑M1/1‑36 (MQ=255) tACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt > 1:1599459‑M1/1‑34 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat < 1:967363‑M1/48‑16 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat < 1:2701776‑M1/48‑16 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca < 1:2332619‑M1/47‑15 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:654322‑M1/1‑25 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt > 1:2656198‑M1/1‑20 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 1:1177225‑M1/50‑32 (MQ=255) gCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:1037548‑M1/1‑17 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt < 1:1783327‑M1/50‑35 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttta < 1:1459854‑M1/50‑36 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:1723164‑M1/1‑11 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:844988‑M1/1‑10 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:766721‑M1/1‑10 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:1837750‑M1/1‑9 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:464429‑M1/1‑9 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 1:487759‑M1/1‑7 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:337936‑M1/1‑6 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:1919‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:586917‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:1827827‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:2751775‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:1425559‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:1879667‑M1/1‑6 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat < 1:1925542‑M1/49‑44 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:217908‑M1/1‑5 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattga < 1:1980471‑M1/49‑47 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:412502‑M1/1‑2 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:1575531‑M1/1‑2 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 1:2547008‑M1/1‑1 (MQ=255) | GTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509512‑1509610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |