| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 48 [0] | [0] 48 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 48 (1.280) | 33/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCAT > NC_000913/2286352‑2286448 | cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:2317826‑M1/50‑2 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:860487‑M1/50‑2 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:617590‑M1/50‑2 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:1414254‑M1/50‑2 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:513765‑M1/1‑48 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:46835‑M1/1‑48 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:1401634‑M1/50‑9 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:1370399‑M1/50‑9 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:2062815‑M1/50‑9 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:347343‑M1/1‑41 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca > 1:1026428‑M1/1‑40 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:295709‑M1/49‑10 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat < 1:1701520‑M1/50‑12 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:613290‑M1/49‑17 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:1063918‑M1/1‑33 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:1018298‑M1/1‑33 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:2586713‑M1/49‑17 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 1:2164492‑M1/50‑19 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:2717792‑M1/1‑32 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa < 1:1736025‑M1/50‑21 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa < 1:509477‑M1/50‑21 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:1475507‑M1/50‑22 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:344871‑M1/50‑22 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:1629325‑M1/50‑22 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:1596107‑M1/1‑28 (MQ=255) tGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt > 1:880319‑M1/1‑27 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 1:1421656‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 1:40617‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa < 1:2741096‑M1/49‑25 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatta < 1:2283446‑M1/48‑24 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg > 1:2669894‑M1/1‑23 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg < 1:2749649‑M1/49‑28 (MQ=255) tttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg > 1:2197056‑M1/1‑20 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:808532‑M1/49‑31 (MQ=255) ttttatCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta > 1:361193‑M1/3‑16 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:576711‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:717143‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:919455‑M1/1‑14 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:1808090‑M1/1‑10 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:833814‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:2329563‑M1/1‑9 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:389005‑M1/50‑45 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt < 1:128221‑M1/50‑46 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta < 1:951461‑M1/50‑47 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:601613‑M1/1‑3 (MQ=255) cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:2115060‑M1/1‑2 (MQ=255) cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:998750‑M1/1‑2 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtaca < 1:2030809‑M1/49‑49 (MQ=255) | CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCAT > NC_000913/2286352‑2286448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |