| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 34 [0] | [0] 33 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 30 (0.820) | 24/96 | 0.2 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAC > NC_000913/3618942‑3619040 | cgcgGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT < 1:1323473‑M1/50‑1 (MQ=255) cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTta > 1:861136‑M1/1‑48 (MQ=255) cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTta < 1:805909‑M1/50‑3 (MQ=255) cgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:963133‑M1/1‑45 (MQ=255) gggcgGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGCtacgc > 1:1693972‑M1/3‑44 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:1105742‑M1/1‑44 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg > 1:2794323‑M1/1‑40 (MQ=255) gacacGGGCATTTGCAGTGCTTGCCGAAGGTAGATTGAGTtacgccattg > 1:2024917‑M1/3‑40 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt > 1:2496496‑M1/1‑39 (MQ=255) cACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtc > 1:3959‑M1/1‑38 (MQ=255) gggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtccc > 1:688811‑M1/1‑35 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 1:1275359‑M1/50‑18 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc < 1:1953056‑M1/50‑19 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg < 1:1142511‑M1/50‑20 (MQ=255) tGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct > 1:265934‑M1/1‑28 (MQ=255) tGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc > 1:2254465‑M1/1‑19 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcgca < 1:479657‑M1/50‑35 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagc < 1:1865683‑M1/50‑37 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:1109947‑M1/1‑14 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:2636948‑M1/1‑14 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagca < 1:1336067‑M1/50‑38 (MQ=255) ggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcag > 1:1753871‑M1/1‑12 (MQ=255) ggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcag > 1:1510161‑M1/1‑12 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg < 1:2302409‑M1/50‑41 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg < 1:949759‑M1/50‑41 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa < 1:581286‑M1/50‑44 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:1012160‑M1/1‑7 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:1757826‑M1/1‑7 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 1:2443489‑M1/1‑5 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatgg > 1:1566729‑M1/1‑4 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:1124781‑M1/50‑49 (MQ=255) ttacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtga < 1:2644140‑M1/50‑50 (MQ=255) ttacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg > 1:2178998‑M1/1‑1 (MQ=255) ttacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg > 1:183981‑M1/1‑1 (MQ=255) | CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAC > NC_000913/3618942‑3619040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |