| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 61 [0] | [0] 61 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 60 (1.600) | 42/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377269‑377366 | aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 1:2184100‑M2/2‑1 (MQ=255)aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 1:564178‑M2/2‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:1414605‑M2/48‑49 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:1159990‑M2/3‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:1867759‑M2/3‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:1369373‑M2/3‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:194532‑M2/4‑1 (MQ=255) cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 1:1068330‑M2/46‑48 (MQ=255) cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 1:17915‑M2/46‑48 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:2541765‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:1163933‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:761052‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:722825‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:645760‑M2/45‑50 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:2656577‑M2/45‑50 (MQ=255) gacaggtaataactcatactgaacagcgataaaagataaaggtgGATAAg < 1:1439742‑M2/6‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:2323996‑M2/8‑1 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:2226030‑M2/42‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:1654979‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:855062‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:2285297‑M2/12‑1 (MQ=255) atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcgc < 1:1915364‑M2/14‑1 (MQ=255) atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:2783955‑M2/37‑49 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1746837‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:82474‑M2/16‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:1053820‑M2/16‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:291687‑M2/17‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGAAGAt < 1:2545666‑M2/18‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:1911352‑M2/19‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 1:500012‑M2/23‑1 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:1629217‑M2/26‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:734873‑M2/26‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:2227610‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:2671977‑M2/27‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:2683464‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:1444385‑M2/24‑50 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:305740‑M2/23‑49 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:1278420‑M2/22‑50 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:2606668‑M2/22‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:628482‑M2/21‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:826753‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:480685‑M2/21‑50 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg < 1:1431757‑M2/31‑1 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt < 1:686913‑M2/33‑1 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:37066‑M2/17‑50 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:1608953‑M2/17‑50 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:2443198‑M2/17‑50 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:1370112‑M2/35‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:1022307‑M2/35‑1 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:575381‑M2/15‑50 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg > 1:75640‑M2/11‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:2671323‑M2/42‑1 (MQ=255) aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:2208859‑M2/8‑50 (MQ=255) aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:1204132‑M2/8‑50 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:456492‑M2/7‑49 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt < 1:2324923‑M2/43‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa < 1:1689414‑M2/45‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:1031954‑M2/3‑48 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:1395681‑M2/48‑1 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg > 1:95777‑M2/2‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg > 1:1714547/1‑50 (MQ=255) | CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377269‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |