| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 25 [0] | [0] 26 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 25 (0.670) | 18/98 | 0.6 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997067‑1997160 | gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:394370‑M1/49‑5 (MQ=255)gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:339368‑M1/49‑5 (MQ=255)gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:2690999‑M1/49‑5 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaac < 1:958423‑M1/50‑10 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg < 1:109727‑M1/50‑11 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt < 1:2789837‑M1/50‑13 (MQ=255) aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttt < 1:2686595‑M1/50‑14 (MQ=255) aCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttta < 1:262508‑M1/50‑15 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtt < 1:2112587‑M1/50‑22 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc > 1:1789154‑M1/1‑25 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc < 1:1957486‑M1/50‑26 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc < 1:2792154‑M1/50‑26 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag < 1:110648‑M1/49‑30 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaa < 1:2108042‑M1/48‑29 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat > 1:2149414‑M1/1‑18 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:1864931‑M1/1‑12 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:2297027‑M1/1‑12 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg > 1:1218926‑M1/1‑11 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccgaa < 1:1308526‑M1/50‑41 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccgaa < 1:1398095‑M1/50‑41 (MQ=255) cGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:2518002‑M1/1‑3 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:1159224‑M1/1‑2 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac > 1:2151512‑M1/1‑1 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac > 1:1123009‑M1/1‑1 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac > 1:1075695‑M1/1‑1 (MQ=255) | GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997067‑1997160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |