| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 34 [0] | [0] 33 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 32 (0.890) +GA |
28/94 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110632‑3110728 | aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:1795356‑M1/50‑3 (MQ=255)aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:659632‑M1/1‑48 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:1141070‑M1/1‑47 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:52752‑M1/50‑4 (MQ=255) tctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:2280728‑M1/1‑43 (MQ=255) tcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat > 1:290061‑M1/1‑41 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:2124164‑M1/1‑39 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 1:975614‑M1/48‑10 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:216896‑M1/50‑13 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:2137586‑M1/50‑13 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttga < 1:1020641‑M1/50‑15 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa < 1:2233771‑M1/50‑16 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat > 1:986911‑M1/1‑34 (MQ=255) gACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:1786332‑M1/1‑30 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg < 1:1212059‑M1/50‑22 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac < 1:2399943‑M1/49‑21 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:511842‑M1/1‑29 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacga < 1:1145217‑M1/50‑23 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 1:601976‑M1/50‑25 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac > 1:1828422‑M1/1‑22 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac > 1:199679‑M1/1‑22 (MQ=255) ttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:2496603‑M1/1‑21 (MQ=255) cACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:1331414‑M1/1‑15 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 1:2412580‑M1/50‑37 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:2613087‑M1/1‑14 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:501572‑M1/1‑13 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:474687‑M1/1‑11 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga > 1:1370347‑M1/1‑9 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga > 1:1851915‑M1/1‑9 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:2765407‑M1/1‑5 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 1:2697861‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:983613‑M1/50‑49 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:926978‑M1/1‑1 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:969013‑M1/1‑1 (MQ=255) | AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110632‑3110728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |