| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 46 [0] | [0] 49 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 43 (1.200) | 36/94 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
AAATTTGTCCTGCTACAACAGGATTAACTTCACAAATATCATTTCTCAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTACAA > NC_000913/738914‑739012 | aaaggcaactggtgatttttattgattgctgagttttgaatacattgaac < 1:3209‑M2/1‑1 (MQ=255) aggcaactggtgatttttattgattgctgagttttgaatacattgaaCGt > 1:235091‑M2/48‑50 (MQ=255) aggcaactggtgatttttattgattgctgagttttgaatacattgaaCGt < 1:1422795‑M2/3‑1 (MQ=255) ggcaactggtgatttttattgattgctgagttttgaatacattgaaCGTc > 1:949859‑M2/47‑50 (MQ=255) aactggtgatttttattgattgctgagttttgaatacattgaaCGTCTac < 1:2627906‑M2/7‑1 (MQ=255) aactggtgatttttattgattgctgagttttgaatacattgaaCGTCTac < 1:9350‑M2/7‑1 (MQ=255) aactggtgatttttattgattgctgagttttgaatacattgaaCGTCTa > 1:2684662‑M2/44‑49 (MQ=255) ggtgatttttattgattgctgagttttgaatacattgaaCGTCTACACt > 1:440659‑M2/40‑49 (MQ=255) gtgatttttattgattgctgagttttgaatacattgaaCGTCTACACTTa < 1:2019460‑M2/12‑1 (MQ=255) atttttattgattgctgagttttgaatacattgaaCGTCTACACTTACt < 1:1821979‑M2/14‑1 (MQ=255) atttttattgattgctgagttttgaatacattgaaCGTCTACACTTACTc < 1:2553967‑M2/15‑1 (MQ=255) tttttattgattgctgagttttgaatacattgaaCGTCTACACTTACTcc < 1:2153829‑M2/16‑1 (MQ=255) ttttattgattgctgagttttgaatacattgaaCGTCTACACTTACTCCt > 1:2771215‑M2/34‑50 (MQ=255) tttattgattgctgagttttgaatacattgaaCGTCTACACTTACTCCt < 1:1938749‑M2/17‑1 (MQ=255) ttattgattgctgagttttgaatacattgaaCGTCTACACTTACTCCTg > 1:60169‑M2/32‑49 (MQ=255) tattgattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGt > 1:2227030‑M2/31‑49 (MQ=255) gttgattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTa > 1:1132121‑M2/30‑49 (MQ=255) attgattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTa > 1:1132159‑M2/30‑49 (MQ=255) ttgattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTaaa > 1:330268‑M2/29‑50 (MQ=255) tgattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAAc > 1:1159064‑M2/28‑50 (MQ=255) gattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAAcc > 1:483336‑M2/27‑50 (MQ=255) gattgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAAcc > 1:746476‑M2/27‑50 (MQ=255) attgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAAcc < 1:1096557‑M2/24‑1 (MQ=255) attgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCg < 1:344108‑M2/25‑1 (MQ=255) tgctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCt > 1:208693‑M2/24‑50 (MQ=255) gctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCt > 1:1277250‑M2/23‑49 (MQ=255) ctgagttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTc < 1:2274860‑M2/28‑1 (MQ=255) agttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAg > 1:2204364‑M2/19‑48 (MQ=255) agttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAg > 1:2532660‑M2/19‑48 (MQ=255) agttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAg > 1:1443197‑M2/19‑48 (MQ=255) ttttgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGc < 1:2034891‑M2/34‑1 (MQ=255) tgaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAg > 1:1490835‑M2/14‑49 (MQ=255) gaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGt < 1:2335080‑M2/37‑1 (MQ=255) gaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGt < 1:2710346‑M2/37‑1 (MQ=255) gaatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGt > 1:860857‑M2/13‑49 (MQ=255) aatacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTaa < 1:1378613‑M2/39‑1 (MQ=255) atacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAAt < 1:793991‑M2/40‑1 (MQ=255) atacattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAAt > 1:411499‑M2/11‑50 (MQ=255) cattgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGaa < 1:2792608‑M2/43‑1 (MQ=255) attgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAAt > 1:2195235‑M2/7‑50 (MQ=255) ttgaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATc > 1:39883‑M2/6‑50 (MQ=255) gaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTa > 1:2328192‑M2/4‑50 (MQ=255) gaaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTa > 1:2618018‑M2/4‑50 (MQ=255) aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTa < 1:1039526‑M2/47‑1 (MQ=255) aCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTAc > 1:102902‑M2/2‑49 (MQ=255) cGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTACaa > 1:2349670/1‑50 (MQ=255) cGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTACaa > 1:2001709/1‑50 (MQ=255) cGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTACaa > 1:1792811/1‑50 (MQ=255) cGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTACaa > 1:1551969/1‑50 (MQ=255) | AAATTTGTCCTGCTACAACAGGATTAACTTCACAAATATCATTTCTCAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCTACAA > NC_000913/738914‑739012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |