| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 12,086 | C→T | intergenic (‑300/‑77) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 12,086 | 0 | C | T | 95.7% | 81.9 / ‑5.6 | 23 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/12); minor base G (1/0); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACA > NC_000913/12039‑12131 | ttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg > 1:2764269/1‑50 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt < 1:121323/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt > 1:425242/1‑49 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 1:338368/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa < 1:431765/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa < 1:501054/50‑1 (MQ=255) tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc < 1:862361/50‑1 (MQ=255) cAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 1:1504020/1‑49 (MQ=255) aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 1:2548960/1‑47 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc > 1:369811/1‑50 (MQ=255) agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc > 1:1441303/1‑50 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACa < 1:2196591/50‑1 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAg < 1:119818/50‑1 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa > 1:1964865/1‑50 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa < 1:119864/50‑1 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc < 1:770096/50‑1 (MQ=255) aaaTGAAATTGGGGAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 1:1693360/1‑49 (MQ=255) aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca < 1:2482291/50‑1 (MQ=255) aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:2552801/1‑49 (MQ=255) tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:999119/50‑1 (MQ=255) ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac < 1:1440534/50‑1 (MQ=255) ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 1:1181576/1‑49 (MQ=255) tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca > 1:2392409/1‑50 (MQ=255) | TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACA > NC_000913/12039‑12131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |