Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,829,233	C→A	L97M (CTG→ATG)	xanP →	xanthine:H(+) symporter XanP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,829,233	0	C	A	100.0%	95.0 / NA	24	L97M (CTG→ATG)	xanP	xanthine:H(+) symporter XanP
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (13/11);  total (13/11)

GCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAT  >  NC_000913/3829188‑3829279                                              |                                               gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgtt                                            >  1:398032/1‑50 (MQ=255) gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgtt                                            >  1:2134752/1‑50 (MQ=255)    tCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         <  1:1648877/50‑1 (MQ=255)     cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:1632135/1‑49 (MQ=255)     cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:2317333/1‑49 (MQ=255)      gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTa                                       >  1:1698471/1‑50 (MQ=255)              aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAggg                                >  1:2662507/1‑49 (MQ=255)              aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAggg                                >  1:2610700/1‑49 (MQ=255)               aaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCa                              >  1:2617416/1‑50 (MQ=255)                 ttAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAcc                            <  1:248352/50‑1 (MQ=255)                    aGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGc                         <  1:951408/50‑1 (MQ=255)                      gCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                       <  1:1075433/50‑1 (MQ=255)                        cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      >  1:1657975/1‑49 (MQ=255)                        cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      >  1:1568015/1‑49 (MQ=255)                        cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      >  1:103348/1‑49 (MQ=255)                        cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCa                     <  1:2694329/50‑1 (MQ=255)                          ggggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAAc                   >  1:546346/1‑50 (MQ=255)                           gggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACt                  <  1:995222/50‑1 (MQ=255)                             gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt                <  1:2099155/50‑1 (MQ=255)                             gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt                <  1:800750/50‑1 (MQ=255)                                cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt             <  1:743107/50‑1 (MQ=255)                                      gCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCg       <  1:2178857/50‑1 (MQ=255)                                          cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTg    <  1:222243/49‑1 (MQ=255)                                           gggATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAt  >  1:1482339/1‑50 (MQ=255)                                              |                                               GCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAT  >  NC_000913/3829188‑3829279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑