| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,948,799 | 1 | . | G | 96.2% | 86.6 / ‑2.1 | 26 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (14/11); total (15/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01 | |||||||||||
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948751‑3948841 | tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc < 1:653552/49‑1 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 1:982265/1‑50 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gg > 1:2697116/1‑50 (MQ=255) aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑ggg > 1:739359/1‑50 (MQ=255) aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTCTTACTCAAAATGCC‑ggg > 1:2373675/1‑50 (MQ=255) gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggg‑gg < 1:2260979/50‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAAt < 1:1207617/49‑1 (MQ=255) tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATgg > 1:2650606/1‑50 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGa > 1:2059574/1‑50 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGa < 1:848250/49‑1 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGAt > 1:1354153/1‑50 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCa < 1:1047801/50‑1 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCa < 1:2607597/50‑1 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCa < 1:1739717/50‑1 (MQ=255) gCACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAg > 1:1750374/1‑50 (MQ=255) cACTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGt > 1:844682/1‑50 (MQ=255) aCTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTg < 1:2080650/50‑1 (MQ=255) aCTACCGTTTTACTCAAAATGCC‑GGGGTGGTGGTAATGGGATCTCCAGt > 1:1036339/1‑49 (MQ=255) cTACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTga < 1:2217548/50‑1 (MQ=255) tACCGTTTTACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGt > 1:1221917/1‑47 (MQ=255) tttACTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATc > 1:1944222/1‑49 (MQ=255) ttACTCAAAATGCCGGGGG‑GGTGGTAATGGGCTCTCCAGTGAGAGATCg > 1:1924143/1‑49 (MQ=255) aCTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAg > 1:2508176/1‑50 (MQ=255) aCTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAg > 1:996901/1‑50 (MQ=255) cTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:2697044/50‑1 (MQ=255) cTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:308026/50‑1 (MQ=255) cTCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:1390370/50‑1 (MQ=255) tCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg > 1:1486990/1‑50 (MQ=255) tCAAAATGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg > 1:1093292/1‑50 (MQ=255) aaaaTGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:37927/50‑1 (MQ=255) aaTGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1979712/1‑49 (MQ=255) aTGCCGGGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:201192/1‑48 (MQ=255) | TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGG‑GGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948751‑3948841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |