| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 21 [0] | [0] 20 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 20 (0.670) | 16/96 | 0.4 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > NC_000913/20564‑20609 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:2060534/50‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCca > 1:417833/1‑48 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATTACCCTACCTCCATGTt > 1:282415/1‑49 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:562874/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:1871062/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:1193102/49‑1 GAGCGCCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2053395/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2018424/50‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:2028005/50‑1 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:847259/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:1179365/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:227412/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:199940/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:525524/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:2674459/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 1:1884147/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2244145/1‑49 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1993645/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:1384699/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:2240605/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:2558589/1‑50 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > NC_000913/20564‑20609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |