BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	263,514	Δ61,897 bp		[ykfI]–ykgH	71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	263514	325410	61897	27 [0]	[0] 27	[ykfI]–ykgH	[ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 263513	0 (0.000)	25 (0.860)	18/94	0.3	100%	coding (157/342 nt)	ykfI	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
*	?	NC_000913	325411 =	0 (0.000)	25 (0.860)	18/94	0.3	100%	intergenic (‑47/+166)	ykgH/betA	uncharacterized protein YkgH/choline dehydrogenase

TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/263464‑263513

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT  >  NC_000913/325411‑325458

TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                                   >  1:413633/1‑49

TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                                   >  1:2208795/1‑49

TTTTCTACCAGAAAATTCACGGCATCGGCTACGGTGATACCGGCATCGA                                                   >  1:792640/1‑49

 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                                   >  1:58410/1‑48

    CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT                                               <  1:352876/49‑1

      ACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG                                            >  1:574653/1‑50

       CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT                                           <  1:1081626/50‑1

         AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT                                         <  1:60252/50‑1

          GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC                                        <  1:184067/50‑1

            AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG                                      >  1:2560305/1‑50

                 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT                                  <  1:1354799/49‑1

                 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT                                  <  1:1839191/49‑1

                  ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT                                <  1:629224/50‑1

                           GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA                       <  1:808277/50‑1

                                    ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC               >  1:1905186/1‑49

                                    ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC               >  1:1636050/1‑49

                                    ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC               <  1:1107426/49‑1

                                       CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA           <  1:2267064/50‑1

                                       CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA           <  1:379046/50‑1

                                       CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA           <  1:2614185/50‑1

                                       CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA           <  1:2182285/50‑1

                                        CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA            >  1:1124902/1‑48

                                          GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC        <  1:2246380/50‑1

                                           CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC       >  1:572812/1‑50

                                           CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC       >  1:1990069/1‑50

                                            ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC      <  1:2377944/50‑1

                                            ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC      <  1:2069112/50‑1

                                            ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC      >  1:919479/1‑50

                                             TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG     >  1:1710946/1‑50

                                                ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT  >  1:41063/1‑50

                                                ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT  <  1:2054006/50‑1

TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/263464‑263513

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT  >  NC_000913/325411‑325458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.